From chemistry-request@server.ccl.net Thu Apr 29 04:12:53 1999 Received: from www.ccl.net (www.ccl.net [192.148.249.5]) by server.ccl.net (8.8.7/8.8.7) with ESMTP id EAA18057 for ; Thu, 29 Apr 1999 04:12:53 -0400 Received: from rzusuntk.unizh.ch (rzumail2.unizh.ch [130.60.128.10]) by www.ccl.net (8.8.3/8.8.6/OSC/CCL 1.0) with ESMTP id EAA15336 Thu, 29 Apr 1999 04:09:34 -0400 (EDT) Received: [from rzurs10.unizh.ch (mbeck@rzurs10.unizh.ch [130.60.68.60]) by rzusuntk.unizh.ch (8.8.5/SMI-5.25) with ESMTP id KAA10254 for ; Thu, 29 Apr 1999 10:09:33 +0200 (MET DST)] Received: from localhost (mbeck@localhost) by rzurs10.unizh.ch (AIX4.2/UCB 8.7/8.7) with SMTP id KAA36614 for ; Thu, 29 Apr 1999 10:09:33 +0200 (MEST) X-Authentication-Warning: rzurs10.unizh.ch: mbeck owned process doing -bs Date: Thu, 29 Apr 1999 10:09:32 +0200 (MEST) From: "Michael E. Beck" To: computational chemistry mailing list Subject: Summary: lipophilicity, logP, clustering Message-ID: MIME-Version: 1.0 Content-Type: TEXT/PLAIN; charset=US-ASCII Dear CCLs, thanks to all, who have answered to my question: Wilfried Langenaeker Janssen Research Foundation Nick Jewell Dept. of Information Studies Sheffield University, UK Gregory L. Durst Lilly Research Laboratories Indianapolis, IN 46285 USA Dr. Volker Jonas San Diego Supercomputer Center Donald B. Boyd, Ph.D. Research Professor of Chemistry Indiana University-Purdue University at Indianapolis Before coming to the summary, here is the original question: as a freshman in the field, I would like to know if there are any recent reviews on the following topics: - calculation of logP (lipophilicity) of organic molecules - recent advances in cluster analysis(especially for HUGE databases), based upon molecular similarity, - recent developments of measures of molecular similarity. In the replies, the following references were given: G. Boon, F. De Proft, W. Langenaeker and P. Geerlings, "The Use of Density Functional Theory based Reactivity Descriptors in Molecular Similarity Calculations" Chemical Physics Letters, 295, 122 (1998). N. Jewell, Internet Journal of Chemistry (www.ijc.com) in the Gasteiger Skolnjikn Award Section (1998) A. Leo, "Chem. Reviews", 93(4), (1993), 1281-1306. P. Buchwold and N. Bodor, "Curr. Med. Chem.", 5, (1998), 353-380. Merz, JPC B 103(4), 714 (1999). P.-A. Carrupt, B. Testa, and P. Gaillard, in Reviews in Computational Chemistry, K. B. Lipkowitz and D. B. Boyd, Eds., Wiley-VCH, New York, 1997, Vol. 11, pp. 241-315. Computational Approaches to Lipophilicity: Methods and Applications. G. M. Downs and P. Willett, in Reviews in Computational Chemistry, K. B. Lipkowitz and D. B. Boyd, Eds., VCH Publishers, New York, 1995, Vol. 7, pp. 1-66. Similarity Searching in Databases of Chemical Structures. Thanks again to all contributors, Michael From chemistry-request@server.ccl.net Thu Apr 29 10:51:36 1999 Received: from rutchem.rutgers.edu (rutchem.rutgers.edu [128.6.1.216]) by server.ccl.net (8.8.7/8.8.7) with ESMTP id KAA21919 for ; Thu, 29 Apr 1999 10:51:35 -0400 Received: from localhost (yong@localhost) by rutchem.rutgers.edu (8.8.8/8.6.10) with SMTP id OAA08863 for ; Thu, 29 Apr 1999 14:48:15 GMT Date: Thu, 29 Apr 1999 10:48:15 -0400 (EDT) From: Dayong He To: chemistry@ccl.net Subject: convert DNA sequence to protein or RNA sequence Message-ID: MIME-Version: 1.0 Content-Type: TEXT/PLAIN; charset=US-ASCII Hello everybody. Do you happen to know where I can find the codes that convert DNA sequence to the corresponding protein sequence or RNA sequence ? Thank you for your information. Regards. Dayong From chemistry-request@server.ccl.net Thu Apr 29 11:56:41 1999 Received: from hugh.chem.uic.edu (HUGH.CHEM.UIC.EDU [131.193.195.93]) by server.ccl.net (8.8.7/8.8.7) with SMTP id LAA22666 for ; Thu, 29 Apr 1999 11:56:41 -0400 Received: by hugh.chem.uic.edu (940816.SGI.8.6.9/940406.SGI.AUTO) id LAA03155; Thu, 29 Apr 1999 11:35:48 -0500 Date: Thu, 29 Apr 1999 11:35:41 +36000 From: Richard Wood To: Dayong He cc: chemistry@ccl.net Subject: Re: CCL:convert DNA sequence to protein or RNA sequence In-Reply-To: Message-ID: MIME-Version: 1.0 Content-Type: TEXT/PLAIN; charset=US-ASCII You could try a good biochemistry text book, such as the one by Stryer. Richard On Thu, 29 Apr 1999, Dayong He wrote: > > Hello everybody. > > Do you happen to know where I can find the codes that > convert DNA sequence to the corresponding protein > sequence or RNA sequence ? > > Thank you for your information. > > Regards. > Dayong > > -= This is automatically added to each message by mailing script =- > CHEMISTRY@ccl.net -- To Everybody | CHEMISTRY-REQUEST@ccl.net -- To Admins > MAILSERV@ccl.net -- HELP CHEMISTRY or HELP SEARCH > CHEMISTRY-SEARCH@ccl.net -- archive search | Gopher: gopher.ccl.net 70 > Ftp: ftp.ccl.net | WWW: http://www.ccl.net/chemistry/ | Jan: jkl@ccl.net > > > > >