From chemistry-request@server.ccl.net  Wed Jul 21 02:34:14 1999
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From: hyl@chu1.chem.nthu.edu.tw (Hsin-Yi Liao)
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Subject: DFT orbital
To: chemistry@server.ccl.net
Date: Wed, 21 Jul 99 14:23:01 TAIST
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  Dear CCL Netters,

       I was told that the so called "orbital
  energies" in DFT do not have the same meaning
  as they do in standard Hartree-Fock.  What 
  does it really mean by this? Can anyone explain 
  it in more detail?  Thank you very much in
  advance!

                             Han-Yen Lee 
                                hyl@chu1.chem.nthu.edu.tw 


From chemistry-request@server.ccl.net  Wed Jul 21 05:20:42 1999
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From: bo@argo.urv.es (Carles Bo)
Message-Id: <199907210904.LAA02248@argo.urv.es>
Subject: Re: DFT Orbital
To: chemistry@server.ccl.net
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>  Dear CCL Netters,
>
>       I was told that the so called "orbital
>  energies" in DFT do not have the same meaning
>  as they do in standard Hartree-Fock.  What 
>  does it really mean by this? Can anyone explain 
>  it in more detail?  Thank you very much in
>  advance!
>
>                             Han-Yen Lee 
>                                hyl@chu1.chem.nthu.edu.tw 
  Dear Han-Yen Lee :
  
  Take a look at a recent paper from Ralf Stowasser and Roald Hoffmann,
  entitled "What do the Kohn-Sham Orbitals and Eigenvalues mean ?"
  JACS, 1999, 121, 3414-3420.
  
  Hope it helps,
 

________________________________________________________________

  Carles Bo
  Dept. de Quimica Fisica i Inorganica
  Universitat Rovira i Virgili          Voice (34) 977 55 95 69
  Pl. Imperial Tarraco, 1               FAX   (34) 977 55 95 63
  43005 - Tarragona                 
  SPAIN                         http://www.quimica.urv.es/~w3qfi
                       http://quimica.urv.es/cgi-bin/card?bo+qfi
________________________________________________________________


From chemistry-request@server.ccl.net  Tue Jul 20 18:19:44 1999
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From: Eugene Leitl <eugene.leitl@lrz.uni-muenchen.de>
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Subject: molecular dynamics of charged solvated biosystems
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I've finally gotten around putting some of the "pretty pictures" from
my Master's work (molecular dynamics of polylysine (chloride), lipid
bilayers using X-PLOR; EGO; VMD; rasmol on a Linux box) on a less
cranky server than liposome.genebee.msu.su:

	http://thematrix.acmecity.com/gift/202/

This work used Helmut Heller's work as a point of departure
http://www.lrz-muenchen.de/~heller/membrane/membrane.html

Out of curiousity, has anybody used massively parallel DSP systems
since 

 A. Gunzinger, U.A. Müller, W. Scott, B. Bäumle, P. Kohler, H.R. vonder
 Mühll, F. Müller-Plathe, W.F. van Gunsteren, W. Guggenbühl Achieving
 Super Computer Performance with a DSP Array Processor IEEE Computer
 Society Press Reprint, Los Alamitos, 1992, pp. 543-550

It seems reasonably certain that particle-in-the-cell types of
algorithms like SPaSM

	http://ftp.swig.org/papers/sc96/INDEX.HTM
	
could greatly profit from good price/performance ratio of modern DSPs
(doing roughly one order of magnitude better than even Beowulfs).

Regards,
Eugene Leitl
From chemistry-request@server.ccl.net  Wed Jul 21 08:52:14 1999
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From: Ricardo Luis Doretto - pos <doretto@ifi.unicamp.br>
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To: chemistry@www.ccl.net
Subject: MM at HyperChem
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Dear ccl,

	I would like to know if it is possible
to do molecular mechanics calculations at the
Hyperchem with the ions Na+ and Cl- as the solvent.

	Thanks in advance,

Ricardo 
From chemistry-request@server.ccl.net  Wed Jul 21 11:16:55 1999
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Date: Wed, 21 Jul 1999 11:08:26 -0400 (EDT)
From: Jan Labanowski <jkl@ccl.net>
To: chemistry@ccl.net
cc: Jan Labanowski <jkl@ccl.net>
Subject: DFT overview in CCL archives.
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Dear CCL survivors {:-)}...

Someone must have advertised my quite outdated Overview Density Functional
Theory lately or search robots found it, since I am geting e-mail about it.
It is available as a link from the page:

    http://www.ccl.net/chemistry/resources/overview/

Several people asked me to provide a printable version (what was currently
available in CCL archives was the HTML version made by latex2html).
Since this was originally LaTeX, I placed the source and PostScript(600dpi) at:

    http://www.ccl.net/cca/documents/DFT/dft-overview/dft-tex/

or if you prefer ftp:

    ftp://ftp.ccl.net/pub/chemistry/documents/DFT/dft-overview/dft-tex/

But please, understand the limitations of this document. It was put
together in a few days as an unofficial handout for some intro talk I was
giving many years ago at ACS meeting in Chicago. It was not touched since
then, and it is outdated and badly written. Someone suggested I put it on
the Web, so I did, but maybe I should not. Use it at your own peril.

Jan
jkl@ccl.net

Jan K. Labanowski            |    phone: 614-292-9279,  FAX: 614-292-7168
Ohio Supercomputer Center    |    Internet: jkl@ccl.net 
1224 Kinnear Rd,             |    http://www.ccl.net/chemistry.html
Columbus, OH 43212-1163      |    http://www.ccl.net/

From chemistry-request@server.ccl.net  Wed Jul 21 00:31:10 1999
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Subject: FREE PC-based Spectroscopy Viewing Software for NMR, MS, IR,
  UV-Vis and so on
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ACD/SpecViewer 4.0 Freeware

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From chemistry-request@server.ccl.net  Wed Jul 21 13:31:15 1999
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From: Mauricio Esguerra <esguerra@mentecolectiva.com>
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Hello,

I want to know if anyone of you knows of any references regarding the
change on the computational time required for some standard ab-initio
calculations like water, benzene, coronene or others, against the year
they were done using the same level of theory and of course taking
advantage of the increase in computational power.

Thanking your invaluable help,


Mauricio Esguerra N.
Grupo de Quimica Teorica
Facultad de Ciencias
Universidad Nacional de Colombia

From chemistry-request@server.ccl.net  Wed Jul 21 13:58:15 1999
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Hello,

I would like to know if it is possible to get semiempirical parameters
for MOPAC calculations (MNDO-d, AM1 or PM3(tm)). Any suggestions will be
appreciated.

Thanks in advance,

Irena

From chemistry-request@server.ccl.net  Wed Jul 21 22:44:26 1999
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Date: Wed, 21 Jul 1999 22:35:52 -0400 (EDT)
From: "E. Lewars" <elewars@alchemy.chem.utoronto.ca>
Message-Id: <199907220235.WAA17393@alchemy.chem.utoronto.ca>
To: chemistry@ccl.net
Subject: TIMES FOR CALCULATIONS OVER THE YEARS--SOME ANSWERS

1999 July 21

Hello,

M. Esguerra asked:

>                 21-JUL-1999 13:26:53.94
>From:  IN%"esguerra@mentecolectiva.com"  "Mauricio Esguerra"
>To:     IN%"chemistry@server.ccl.net"  "ccl"
>Subj:   CCL:Comp. time vs. Year
>
>
>Hello,
>
>I want to know if anyone of you knows of any references regarding the
>change on the computational time required for some standard ab-initio
>calculations like water, benzene, coronene or others, against the year
>they were done using the same level of theory and of course taking
>advantage of the increase in computational power.
>
>Thanking your invaluable help,
>
>
>Mauricio Esguerra N.
>Grupo de Quimica Teorica
>Facultad de Ciencias
>Universidad Nacional de Colombia
>>===========


The Summer 1993 edition of Gaussian NEWS says:
Approx. times for single-point RHF/6-31G* calc on sym-triamino-trinitro-
benzene (300 basis functions):

Polyatom (ca. 1967) on CDC 1604         200 years  (if it would run at all)
G80                 on VAX 11/780       1 week     (if it would run at all)
G88                 on Cray Y-MP        1   hr
                    on IBM RS/6000      4.5 hr
                       (Model 550)
G92                 on Cray Y-MP        9   min
                    on Cray C90         4.5 min
                    on IBM RS/6000      1   hr
                    on 486 DX/50       20   hr
                       (a PC)
------
(G98                 550 MHz Pentium III   ??? --EL)


  In "The Development of Computational Chemistry in the United States",
by J. D. Bolcer and R. B. Hermann, Chapter 1 in _Reviews in Computational
Chemistry_, Vol 5 (1994), it is said (page 12) that computers in 1989 were
100 000 (10^5) times faster than in 1959 [Coulson, speaking in 1959 +
30 years].

        E. Lewars

======================================================
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From: "E. Lewars" <elewars@alchemy.chem.utoronto.ca>
Message-Id: <199907220238.WAA17446@alchemy.chem.utoronto.ca>
To: chemistry@ccl.net
Subject: MP2 cf. HF FOR NMR SPECTRA

Hello,  I read somewhere that NMR chemical shifts calc at the MP2 level are
somewhat better than at the HF level. Has anyone a reference to this?
Thanks.

  E. Lewars
=======
From chemistry-request@server.ccl.net  Wed Jul 21 23:06:22 1999
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From: "E. Lewars" <elewars@alchemy.chem.utoronto.ca>
Message-Id: <199907220257.WAA18010@alchemy.chem.utoronto.ca>
To: chemistry@ccl.net
Subject: SOME MORE REPLIES re ADIABATIC/VERICAL IONIZATION...

1999 July 20

MORE ANSWERS TO ADIABATIC AND VERTCAL IONIZATION ENERGIES

I have two more replies to my question on adiabatic & vertical IEs, and one
"reply" from me.
  Thanks again to everyone who responded.

   E. Lewars
=================


#1a

Subject: vertical vs. adiabatic ie's
Date: Mon, 19 Jul 1999 14:09:52 -0400

Dear Dr. Lewars,

You can find vertical and adiabatic ionization energies in many
experimental articles on UV photoelectron spectroscopy. Experimentally,
the vertical IE corresponds to the maximum of the band envelope, which
can easily be measured. You can generally find this kind of IE in PES
articles, unless otherwise stated. In contrast, the adiabatic IE (which
is due to the v=0 - v=0 transition) is often associated with the
photoelectron band onset. This, of course, is only an entirely valid
assumption if the band is resolved and the vibrational assignment has
been done. It is usually fairly easy to find out from the experimental
article whether the published value indeed refers to the experimental
band maximum, i.e. to the vertical value. However, you can generally get
a better estimate for the adiabatic IE of a molecule from photoionzation
mass spectroscopy. In a similar manner, EA values can be obtained from
papers on photodetachment experiments. 
I would like to note that there are a number of computational articles
dealing with the issue of ionization energies and electron affinities.
The vertical ionization energy is calculated as the energy difference
between the neutral molecule and the cation at the geometry of the
neutral. In contrast, the adiabatic ionization energy is usually taken
as the energy difference between the two at their respective equilibrium
geometries. The vertical and adiabatic electron affinities are
calculated analogously, as the energy difference between the anion and
the neutral. The IE value obtained using Koopmans' theorem will be close
to the vertical IE. However, this is only true if your molecule is
closed-shell (otherwise Koopmans' theorem will not hold anyway) and the
calculated value will neglect the so-called correlation and
reorganization energy contributions. On the other hand, if you calculate
the IE or EA as an energy difference, the reorganization contribution is
taken care of by definition and you can deal with the correlation energy
contribution by using an appropriate level of theory. You will also find
papers on diatomic molecules (and a few triatomics) where the complete
Franck-Condon envelope has been calculated, not only those two
characteristic energies.

I hope this helps. Best regards,
Miklos Feher

************************************************
Dr. Miklos Feher
senior scientist, computational chemistry
Nanodesign Inc., Suite 300, Research Park Centre
150 Research Lane, Guelph, ON, N1G 4T2, Canada
Tel: 519-823-9088    Fax: 519-823-9401  
e/mail:mfeher@nanodesign.com 
************************************************
===========


#2a

1999 July 21
>From: M. Feher
REFERENCES

Hello,
Thanks for your e/mail. There are a number of books on uv photoelectron
spectroscopy, which discuss the measurement of vertical and adiabatic
ionization energies. The couple of best general ones:
J.H.D. Eland: Photoelectron Spectroscopy, Butterworth, London, 1984.
J.H.M. Hollas: High Resolution Spectroscopy, Butterworth, London, 1982.
A more detailed discussion of the ionization process and a comparison of
IE values from different methods can be found in:
J. Berkowitz, Electron Spectroscopy: Theory, Techniques and
Applications, Academic Press, London, 1976.
You can find a lot of interpreted spectra for molecules of the size that
are of interest to you in the book of the inventor of PES:
D.W. Turner: Molecular photoelectron spectroscopy, Wiley, London, 1970
and a detailed compilation of spectra and assignments in:
K. Kimura: Handbook of HeI photoelectron spectra of fundamental organic
molecules : ionization energies, ab initio assignments, and valence
electronic structure for 200 molecules, Japan Scientific Societies
Press, New York, 1981.
Luckily copies of all of these books are available in the UoT Library.
In terms of vertical and adiabatic electron affinities, I am not aware
of any books. Nonetheless, you can find many articles and reviews if you
search the literature for negative ion photoelectron spectroscopy, UVPES
of anions or, as it is sometimes called, photodetachment spectroscopy. 
As you will see in the books and articles, my recipe for determining
vertical IE's of EA's holds in most cases, with a few exotic exceptions
(such as when the molecule autoionizes or pre-dissociation occurs,
etc.). The adiabatic value is a bit more uncertain, unless the
vibrational structure is resolved - there are plenty of examples where
this is the case. Your source for appearance potentials is probably more
reliable for the adiabatic values, though. One must be very careful with
Koopmans' theorem IE's: it breaks down more often than many people
realize, the simplest case of course being the nitrogen molecule. Just a
comment about the table of values: the relative magnitude of the
experimental vertical and adiabatic values for acetone seems odd. 

I hope this helps. You can e/mail me if you have further questions. Good
luck with the calculations!

Best regards,
Miklos Feher

************************************************
Dr. Miklos Feher
senior scientist, computational chemistry
Nanodesign Inc., Suite 300, Research Park Centre
150 Research Lane, Guelph, ON, N1G 4T2, Canada
Tel: 519-823-9088    Fax: 519-823-9401  
e/mail:mfeher@nanodesign.com 
************************************************
===========

#3a
(E. Lewars)
I have found that the compilation
R. D. Levin and S. G. Lias, "Ionization Potential and Appearance Potential
Measurements, 1971-1981", National Bureau of Standards, 1982
puts a V besides those IEs that are vertical, allowing one to conveniently
compare vertical and adiabatic energies.

This may be of some interest--here are some ionization energies I calculated:
-----------------------------------------------------------------------
 IEs are in eV
 The basis set for the calculations is 6-31G*
 The exp values are from R. D. Levin and S. G. Lias, "Ioniation Potential
and Appearance Measurements, 1971-1981", National Bureau of Standards, 1982,
except for the CH3SH value, which is quoted in  L. A. Curtis, R. H. Nobes, J. A.
Pople and L. Radom, J Chem Phys, 1992, 97, 6766.

=========================================================================
                    IE from deltaE          IE from Koopmans   some exp values
                      HF  MP2(FC)             HF    MP2(FC)
CH3OH adiabatic      9.38  10.57             ----     ----       10.90
CH3OH vertical       9.66  10.82             12.06   12.12       10.95

CH3SH adiabatic      8.34   8.97              ----    ----        9.44
CH3SH vertical       8.38   9.03              9.69    9.69 (sic)  ---

acetone adiabatic    8.19   9.63              ----    ----        9.71, 9.74
acetone vertical     8.37   9.78             11.07    11.19       9.5,  9.72

===========================================================================
 G2 calculations give accurate IEs and EAs, but are practical only for small
molecules, and can't be conveniently (i.e. using the automated prceedure
implemented in Gaussian) used for vertical energies (since the geometry of the
ion would be altered from that of the neutral precursor). G2: see e.g. Curtis et
al above, and L. A. Curtis, D. J. Lucas, and J. A. Pople, J Chem Phys, 1995,
102, 3292, and refs therein. Also J. B. Foresman and A. E. Frisch,
"Exploring Chemistry with Electronic Structure Methods", 2ns ed., Gaussian
Inc., Pittsburgh, PA, 1996, Chapter 7.
===============
