RasMol 2.3 Molecular Graphics Visualisation tool. Roger Sayle BioMolecular Structures Group Glaxo Research & Development Greenford, Middlesex, UK. February 1994 RasMol is an X Window System tool intended for the visualisation of proteins and nucleic acids. It reads Brookhaven Protein Databank (PDB) files and interactively renders them in a variety of formats on either an 8bit or 24/32bit colour display. The complete source code and user documentation for the UNIX/X11, IBM PC/MSWindows and the VMS/DecWindows versions may be obtained by anonymous ftp from ftp.dcs.ed.ac.uk [129.215.160.5] in the directory /pub/rasmol. All the source code is contained in the file RasMol2.tar.Z and the MS Windows source code and executable in the file raswin.zip. Both of these files include on-line help, hypertext documentation and the previous (dated) version of the PostScript user reference manual. Please remember to use "binary" mode when transferring files between UNIX and MSDOS systems. Check that the file size is the same before and after transfer. The MSWindows error "No Memory for Application" is symptomatic of transfering "raswin.exe" in ASCII mode (corrupting it). The program is intended for teaching and generating publication quality images. The program has both a menu system and a full featured command line interface. Different parts and representations of the molecule may be coloured or displayed in a number of formats independently. Currently supported formats include wireframe, ball and stick, backbone, space filling spheres and solid or strands ribbon models. The space filling spheres may even be shadowed. The molecule may be manipulated using the mouse, the scroll bars, the interactive command line or from a dials box (if one is attached). The resulting image may be saved at any point in PostScript, GIF, PPM, Sun rasterfile or Microsoft BMP formats. For more details see the RasMol user reference. On a SparcStation, it can shadow a 10,000 atom spacefilling protein in less than 10 seconds. The current version of the program has been tested on sun3, sun4, sun386i, SGI, DEC & E&S mips based machines, DEC Alpha (OSF/1 and OpenVMS), VAX VMS (under Dec Windows), IBM RS/6000, hp9000, sequent compiled under both gcc and (typically) the native compiler. The version for Microsoft Windows requires version 7 of the Microsoft Optimizing C Compiler or Visual C++ Compiler and the Microsoft Software Development Kit (SDK). The source code is public domain and freely distributable provided that the original author is suitably acknowledged. Any comments, suggestions or questions about the package may be directed to either "rasmol@dcs.ed.ac.uk" or "rasmol@ggr.co.uk". Thank you for acquiring a copy of the RasMol distribution. I hope you enjoy it! If you like the program and decide to use it, *Please* send me a short email message to that effect, together with any comments or suggestions for improving the program. If you appreciate the large amount of work that has gone into creating RasMol, a small donation of $40 US or #25 GBP to the address below would be welcome. Contact Address: Roger Sayle, Department of Computer Science University of Edinburgh The King's Buildings, Mayfield Road, Edinburgh EH9 3JZ SCOTLAND Tel: (+44) 081 966 3567 (+44) 031 650 5163 EMail: ros@dcs.ed.ac.uk