From owner-chemistry: at :ccl.net Wed Mar 21 09:43:01 2007
From: "Nathalie Reuter nathalie.reuter###cbu.uib.no" <owner-chemistry-x-server.ccl.net>
To: CCL
Subject: CCL: Protein Morpher
Message-Id: <-33863-070321051430-19708-9bHQKiKnxaxs9IAH+ps3oQ-x-server.ccl.net>
X-Original-From: Nathalie Reuter <nathalie.reuter-.-cbu.uib.no>
Content-Transfer-Encoding: 7bit
Content-Type: text/plain; charset=ISO-8859-1; format=flowed
Date: Wed, 21 Mar 2007 09:42:43 +0100
MIME-Version: 1.0


Sent to CCL by: Nathalie Reuter [nathalie.reuter/./cbu.uib.no]

Hi,

you can try WEBnma (http://www.bioinfo.no/tools/normalmodes).
If you first upload the open conformation, calculate the approx. normal 
modes and then choose the option 'calculate animation of a 
transconformation' at the bottom of the analysis page. You need then to 
upload the second (close) conformation.

I would be pleased to help you do it if you encounter problems with our 
website.

Regards,
Nathalie

---
Nathalie Reuter
Computational Biology Unit
Univ. of Bergen
Norway
http://www.cbu.uib.no
http://www.bioinfo.no



Alessandro Casoni alessandro.casoni a unimi.it wrote:
> Sent to CCL by: "Alessandro  Casoni" [alessandro.casoni!A!unimi.it]
> Hi, does anyone know any software (preferably open source) able to do protein morphing? I have a receptor in 2 conformations and I want to build an intermediate conformation. 
>
> Any help will be appreciated...
>
> Alessandro>
>
>
>