Water water everywhere but not a drop to drink
I am curious about the way water is treated in the Discover
code from Biosym. The Discover parameters below are
from the Consistent Valence Force Field (CVFF) used by
Discover.
Biosym uses what appears to be some variant of SPC water. I
give the relevant parameters below for comparison. For
reference on SPC, I use the article by Jorgensen et. al.
"Comparison of simple potential functions for simulating
liquid water" J. Chem. Phys. 79 (1983) p. 926.
SPC Discover (CVFF)
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rigid water Yes No
r(OH) Ang. 1.0 0.96
angle (HOH) deg. 109.47 104.5
Charge(O) -0.82 -0.82
Charge(H) 0.41 0.41
Ax10^-3,
kcal A^12/mol 629.7 629.358
C
kcal A^6/mol 625.5 625.5
The HOH angle of 109.47 for SPC water was required to
fit the O-O radial distribution for liquid water,
in particular the hump at ~4.5 angstroms (see above
reference). The bond angle of 104.5, used in CVFF,
is more in line with the gas-phase value.
As well, SPC uses rigid water, while CVFF is a flexible
water model with Morse potential for O-H and quadratic
term for the HOH bond angle.
My questions:
Have there been any tests, published or nonpublished,
to verify the modifications used by Biosym.
Also, Discover, apparently does not implement SHAKE
so that rigid water models could be used. Is the
reason for this scientific or pragmatic?
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Mark A. Thompson
Sr. Research Scientist email: d3f012 at.at pnlg.pnl.gov
Molecular Science Research Center FAX : 509-375-6631
Pacific Northwest Laboratory voice: 509-375-6734
PO Box 999, Mail Stop K1-90
Richland, WA. 99352
Argus available via anonymous ftp from pnlg.pnl.gov (130.20.64.11) (in the
argus directory). Download the README file first.
Disclaimer: The views expressed in this message are solely my own and
do not represent Battelle Memorial Institute, Pacific
Northwest Laboratory, or any of its clients.
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