Semi-empirical parameterization...
- From: jle -8
at 8- world.std.com (Joe M Leonard)
- Subject: Semi-empirical parameterization...
- Date: Wed, 13 Apr 1994 16:04:20 -0400
Something for folks to think about...
The various SE parameter sets were all (to the best of my knowledge)
developed on VAXen about 10-ish years ago (6-ish for PM3?). Since
that time, there's been a 2-4 orders-of-magnitude increase in
CPU horsepower, and there has to be an improvement in the quality and/or
amount of experimental data to parameterize against.
Doesn't this suggest that it's a worthwhile idea to develop an AM2/PM4
set (with or without d-orbitals) that could (a) use the extra
stuff mentioned above and (b) specifically examine the known problem
areas of the various methods? Judging from solvation work such
as AMSOL, parameter sets can be generated in a CPU-day or a CPU-week
on the high-end stuff available now. Several/Many sets of params can
be generated very quickly, using whatever scientific or
empirical constraints one wishes to impose...
This doesn't even take "novel" machines like SIMD/MIMD/MPP boxes into
account - these might make the process even faster.
Folks will probably say that "we should not invalidate past results".
True, but if Allinger's allowed three different mechanics FF's (not
counting the modifications to each that have appeared over time), I think
folks will readily accept a new SE parameter set if it's properly done and
disseminated.
This way, we'll be able to get rid of any problem areas that are artifacts
of the limited capabilities and/or datasets used in the earlier
work. It will also let folks include LARGE small molecules as opposed to
the SMALL small molecules used in the past.
Whatcha think?
Joe Leonard
jle -8 at 8- world.std.com