Na parameters
Is anybody aware of any Na+ parameters for use in molecular dynamics
simulations? Nothing fancy, it's for a down-to-earth basic protein
simulation. I'm looking for partial charges for the environment of
the Na+ to include polarization of that immediate environment.
Something along the lines of (but then for Na): Y. Shiratori,
S. Nakagawa, "Parametrization of the calcium binding site in proteins
and molecular dynamics simulation of phospholipase A2", JCC12 (1991)
717-730.
Cheers,
Marc
--
Marc Lensink tel +358 8 553 1161
dept of Biochemistry, Biocenter, University of Oulu
PO Box 3000, 90014 Oulu, Finland fax +358 8 553 1141