Re: CCL:Looking for a program

 Francois, try PYMOL!
 http://pymol.sf.net
 1) runs under linux, irix, windows, osx
 2) command mode available with "pymol -c"
 3i) reads and writes PDB, SDF, MOL, etc.
 3ii) transformation can be done with mouse or explicit "translate",
 "rotate" commands as well as a combined sequence/structure alignment
 "align" command.
 3iii) "save filename.pdb" will store your new coordinates
 4) PyMOL is free, modifiable, and redistributable in modified form.
 I (the author) do make periodic requests for funding to support
 ongoing development, but such funding remains optional.  Before too long,
 I'll be rewarding such support with a feature-enhanced version.
 Cheers,
 Warren
 On Fri, 20 Dec 2002, FyD wrote:
 > Dear All,
 >
 > I am looking for a program that:
 > 1- Would work under UNIX (in particular Linux & Irix),
 > 2- Could be ran using scripts i.e. in a non-graphical way,
 > 3- Would allow to (i) load a structure, (ii) modify/control its orientation
 > (axis x, y, and z), and (iii) save the new Cartesian coordinate set defined
 by
 > the new orientation, and if possible
 > 4- would be freely distributed for all users...
 >
 > Thanks, Regards, Francois