Chimera molecular modeling system



The UCSF Resource for Biocomputing, Visualization, and Informatics
 is pleased to announce the newest release of UCSF Chimera, an
 interactive molecular modeling system.  It is free to academic and
 non-profit users and is available for Windows, Linux, Mac OS X, IRIX,
 and Tru64 Unix.  It can be downloaded from http://www.cgl.ucsf.edu/chimera
 Chimera has the capabilities common to many molecular graphics programs,
 as well as a number of more unique features, including:
    - Display of multiple sequence alignments and associated
      structures, with information flow in both directions
    - Atom-type identification within arbitrary molecules
    - Hydrogen-bond identification using crystallographically-derived
      distance and angle criteria
    - Display of 3-dimensional data sets as contour surfaces or
      transparent solids, with interactive threshold adjustment
    - Playback of molecular dynamics trajectories (AMBER format;
      others forthcoming)
    - Interface to facilitate screening of candidate ligands from
      DOCK, including filtering by number/position of hydrogen bonds
    - Extensibility as a design principle, allowing users to create
      custom modules without changing Chimera code
 Further description of Chimera's features can be found at
 http://www.cgl.ucsf.edu/chimera
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 On behalf of the Chimera development team,
   Elaine Meng      meng*at*cgl.ucsf.edu
   Computer Graphics Laboratory, RBVI
   University of California, San Francisco