CCL: [Summary] CD spectrum simulation
- From: "Mark Thompson"
<mark(at)planaria-software.com>
- Subject: CCL: [Summary] CD spectrum simulation
- Date: Tue, 1 Jul 2003 15:33:12 -0700
(Original question from Edgar Luttman):
> I would like to know if there is any method to
> simulate (at least a rough) CD spectrum of a
> small peptide. I do have a PDB file (so I have
> 3D coordinates) and it would be great to
> predict a spectrum from this.
(One of the responses):
>
> If you have enough computer power you can calculate the spectrum
> ab initio // (TD)DFT. (Dalton, Gaussian'03). But currently it would need
> to be a very small peptide, and you'd need a good idea of conformational
> distribution in solution at your experimental conditions.
>
> Maybe someone has made or should make a semi-empirical extention
> of e.g. ZINDO that can do the required electric and magnetic transition
> dipole moments etc.
>
ArgusLab 3.1 will do these calculations. Simply select "rotary
strength"
> from the properties part of the ZINDO dialog box and a ZINDO/RPA
calculation
will be performed that includes the CD spectra (rotary strengths of the
UV/vis transitions).
You can download ArgusLab from :
http://www.planaria-software.com/
Cheers,
Mark
=================================
Mark Thompson, Ph.D.
Planaria Software
PO Box 55207
Seattle, WA 98155
FAX: 206-440-3305
ArgusLab is available at:
http://www.arguslab.com
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