Re: CCL:size of ligand binding pocket

[Andrew Orry <andy %x% molsoft.com>]

 > I am looking for software which is able to quantify the
 > size/depth of ligand binding pockets of proteins?
 >
 > Thanks in advance,
 > Uwe
 Dear Uwe
 The ICM suite of software has a number of different functions to analyze
 ligand binding pockets. Please see www.molsoft.com or the following
 papers:
 An J, Totrov M, Abagyan R. Pocketome via Comprehensive Identification and
 Classification of Ligand Binding Envelopes. Mol Cell Proteomics. 2005
 Jun;4(6):752-761. Epub 2005 Mar 9.
 An J, Totrov M, Abagyan R. Comprehensive identification of "druggable"
 protein ligand binding sites. Genome Inform Ser Workshop Genome Inform.
 2004;15(2):31-41.
 Thanks
 Andy
 On Wed, 15 Jun 2005, Uwe Richter wrote:
 > Dear CCLers,
 >
 > I am looking for software which is able to quantify the
 > size/depth of ligand binding pockets of proteins?
 >
 > Thanks in advance,
 > Uwe
 >