Re: CCL:3D->2D softwares?
- From: Boris Gorelik <bgbg (a) pob.huji.ac.il>
- Organization: HUJI
- Subject: Re: CCL:3D->2D softwares?
- Date: Mon, 27 Jun 2005 21:57:21 +0300
On Mon June 27 2005 10:56, JunJun Liu wrote:
> Dear All:
>
> Is there a software in linux can convert 3D small organic structures to 2D
> sketch structures? It will be more preferable if the software has a
> function of exporting 2D structures to picutures. Thanks in advance!
If you don't need to do this in a script, and if you need to process only a
few molecules, try this:
convert the molecule to SMILES (openbabel does this very well), then launch a
xdrawchem, choose Tools->Input SMILES and paste the SMILES file you've just
created, then File->Save Picture
XDrawChem has an option of opening SMILES files directly, but on my computer
this does not work.
Both XDrawChem and opebabel are free (GPL): http://openbabel.sourceforge.net/
and http://xdrawchem.sourceforge.net/
--
Boris Gorelik
Mon, 27/Jun/2005, 21 Sivan 5765
-------------------------------------------------
! Molecular Modelling Group !
! Pharmacy School, Hadassa Faculty of medicine !
! The Hebrew University of Jerusalem !
! http: // www .md.huji.ac.il/models/group.html !
!
!------------------------------------------------