CCL:G: Summary: Spin Density vs SOMO surfaces
- From: Pascal Gosselin <Pascal.Gosselin],[univ-lemans.fr>
- Subject: CCL:G: Summary: Spin Density vs SOMO surfaces
- Date: Fri, 12 May 2006 11:58:56 +0200
Sent to CCL by: Pascal Gosselin [Pascal.Gosselin(!)univ-lemans.fr]
Dear CCLers,
I realized that I never posted a summary of the answers I received to
the following question.
Here is a fix for this negligence:
Thanks to everyone who replied to my original question about the
differences between the Spin Density and SOMO surfaces:
Alan Shusterman, David Shobe, Noel O'Boyle, Doug Fox, Christophe
Morell.
The answers are given below.
Regards,
Pascal Gosselin.
--------------------
Original question:
--------------------
I wanted to visualize the localization of the unpaired electron
in radical-cations whose structures were optimized at the UB3LYP/6-31G*
level in Gaussian98.
For that purpose, I asked Gaussview to compute both Spin Density and
SOMO surfaces.
In most cases, both pictures were very similar. However, in some cases,
I was surprised to observe two very different pictures, i.e.
the surfaces were located over completely different regions of the
radical-cation.
In some cases, alphaSomo, alphaSomo-1 and betaSomo were found very
close in energy.
I tried to obtain a "mean view" of the system by adding the
alphaSomo
and alphaSomo-1
then subtracting betaSomo (with the cubman utility within g98 package).
The resulting picture remained different of the Spin Density surface.
Has somebody an explanation?
--------------------
Answers:
Alan Shusterman:
--------------------
You might want to search thru the CCL archives. I believe that this
question has been asked before and rather complete answers were given.
The short answer is this: unrestricted methods (UHF, UB3LYP, etc.)
assign a unique orbital to every electron (rigorously, every
unrestricted orbital is a SOMO). The spin density surface is based on
the difference in total alpha and total beta electron density. Since
spin density depends on *all* of the electrons, there is no reason to
expect the spin density surface to resemble a particular MO.
However, for many radicals, all of the occupied beta MO#i have a
corresponding occupied alpha MO#i of similar shape. These orbitals
are essentially double-occupied and do not contribute to the spin
density. In this case, one alpha MO (usually alpha HOMO, or
"SOMO"
according to GaussView) contributes to the spin density.
--------------------
David Shobe
--------------------
Because it's an unrestricted calculation *every* orbital is a SOMO!
(= singly occupied molecular orbital). What you're calling the SOMO
is actually the highest occupied alpha molecular orbital. I would
choose the spin density as more representative of where the ion has
"radical character."
--------------------
Noel O'Boyle
--------------------
Perhaps you should square the SOMOs (using cubman) before adding and
subtracting
them (since the density is the square of the MO).
--------------------
Doug Fox
--------------------
I can only guess but note that the orbitals in a spin unrestricted
calculation are ordered by occupation and then by energy. Thus it is
possible that the real SOMO, i.e. one which has no beta counterpart,
can be somewhere other than alphasomo or alphasomo-1. Check the top
few orbitals to try and match up alpha/beta SOMOs for the top few
orbitals.
--------------------
My reply to Doug Fox
--------------------
You are right: I had already found what you call the "real"
SOMO in
several examples.
It was for instance, the alphaHOMO-2 and the beta counterpart (same
shape) was
the first unoccupied beta orbital (betaLUMO). But, that's what
disturbs me !
Shouldn't the "real" SOMO be the highest HOMO according to
the
Aufbau principle?
Or is that just an artifact due to the Unrestricted method used
(UB3LYP)?
As a matter of fact, ROHF results show a SOMO very similar to the
Spin Density surface
(ie -> no problem) but, I never succeeded in making the ROB3LYP
calculations to converge,
despite numerous tries with different initial guesses...
On the other hand, if we admit that the SOMO is, ie alphaHOMO-2,
could that fact
reflect a particular stabilization of the radical cation?
--------------------
Doug Fox 2nd reply
--------------------
The Aufbau principle is an ideal but not a guarantee. The energy
of orbitals depends a good deal on what element is involved. For
example the lone pair electrons on F often get in the way of defining
an active space because the bonding orbitals fall above them in
energy. ROHF artifically forces the SOMO to be the highest alpha
orbital by pairing the other orbitals.
--------------------
Christophe Morell (in French, not posted on the mailing list)
--------------------
Etes-vous sûr que vous visualisez la SOMO? En fait je
me suis rendu compte recemment que la SOMO peut être
quelques fois enterrée, c'est à dire que parfois ce
n'est pas la plus haute en énergie. Je vous conseille
donc de visualiser les couples d'orbitales alpha et
béta proches de la HOMO afin de vérifier quelle est
exactement la SOMO
--------------------
My reply to Christophe Morell (in French, not posted on the mailing
list)
--------------------
Merci pour vos conseils.
Effectivement, j'ai trouvé dans plusieurs cations-radicaux
étudiés au
niveau UB3LYP, une alphaHOMO "enterrée" dont l'allure
rappelle
fortement la surface de densité de spin. De plus, cette (alphaHOMO
-
n) ressemble à la première betaLUMO ce qui correspond bien
à ce qu'on
attend d'une SOMO.
Dans ces exemples, le diagramme d'énergie des OM alpha et
béta met en
évidence le caractère "isolé"
(non-apparié à première vue) de cette
SOMO par rapport aux autres OM pour lesquelles on trouve pour chaque
alpha une béta d'énergie très voisine.
Ce qui me gêne, c'est de considérer comme SOMO une orbitale
qui ne
soit pas la plus haute en énergie. N'est-ce pas contraire au
principe
Aufbau?
Par ailleurs, considérant une SOMO d'énergie inférieure
à la HOMO,
cela pourrait-il indiquer une stabilisation particulière du
cation-
radical correspondant par rapport à un autre R+. dont la SOMO
serait
bien la HOMO?
--------------------
Christophe Morell 2nd reply (in French, not posted on the mailing list)
--------------------
vos questions sont délicates, je n'ai malheureusement
pas de réponses définitives en la matière.
Néanmoins, ce qui est certain c'est qu'il faut être
prudent avec les radicaux. Car en général les radicaux
sont des réacitfs mous, c'est à dire dont les
orbitales frontières sont mals séparées. Cela implique
que plusieurs configurations électroniques sont à
envisager (d'un point de vue chimie quantique
plusieurs déterminants).
Si vous regarder le livre de Nguyen Trong Ahn
orbitales frontières manuel pratique, à la page 95,
les différentes configurations possible pour un
radical sont proposées. Si la configuration
fondamentale, la SOMO est la HOMO, dans d'autres
configuration la SOMO est "enterrée". Le poids de
chacune des configuration est pris en compte dans un
calcul CI interaction de configuration. Je serais pret
à prendre le pari que le calcul en MP2 de votre
radical implique un forte contamination de spin.
Pour ce qui concerne votre conclusion concernant la
réactivité j'aurais tendance à y souscrire d'un point
de vue purement intuitif. Pour comparer la réactivité
de vos radicaux, une solution est de calculer la
dureté de vos radicaux.
See p.95 in N. Trong Anh, Orbitales frontières : manuel pratique,
InterEditions / CNRS Editions, 1995