CCL: cavity determination
- From: "Victor Rosas-Garcia"
<quimico69()yahoo.com>
- Subject: CCL: cavity determination
- Date: Thu, 22 Feb 2007 17:48:08 -0500
Sent to CCL by: "Victor Rosas-Garcia" [quimico69 _ yahoo.com]
Hello everybody,
I am trying to calculate the size of the molecular cavity for a series of
macrocycles, and someone suggested the use of alpha shapes. I am not very
familiar with these. I have located some (highly mathematical) literature and
web pages about alpha shapes. In addition, I am trying to get a copy of
Edelbrunner's papers on its application to chemical species (don't have them
yet). So my questions are:
a) How widely used are alpha shapes in working with molecular cavities? (my
library search has turned up very little)
b) Can anyone recommend software to calculate alpha shapes of molecules?
So far I have found Hull by Ken Clarkson, and Alpha Shapes at Duke, but I'm
still trying to get them to compile with gcc.
thank you for you attention
Victor M. Rosas Garca, PhD
Facultad de Ciencias Quimicas, UANL
e-mail: quimico69|-|yahoo.com