CCL: Minimizations stopped without convergence
- From: "Giorgio Maccari"
<giorgio.maccari.__.email.it>
- Subject: CCL: Minimizations stopped without convergence
- Date: Wed, 20 Jun 2007 05:36:05 -0400
Sent to CCL by: "Giorgio Maccari" [giorgio.maccari##email.it]
Hi
I am Giorgio Maccari from the University of Siena (Italy). I have a problem with
the minimization with macromodel.
I have tried to minimize a big protein. I have setuped my job for stop after
50000 iterations and with a convergence threshold based on the gradient. Then I
have started the minimization from the linux shell with the comand 'bmin'. After
some iterations (less than the maximum) the minimization stop without any error
message and without that the convergence treshold has been caught up.
For more clarity I enclose also the com file and the last rows of the log file
and the machid file.
Thanks
COM file:
pI_txl_mini6.mae
pI_txl_mini6-out.mae
MMOD 0 1 0 0 0.0000 0.0000 0.0000 0.0000
FFLD 3 1 0 0 1.0000 0.0000 0.0000 0.0000
SOLV 3 1 0 0 0.0000 0.0000 0.0000 0.0000
BDCO 0 0 0 0 41.5692 99999.0000 0.0000 0.0000
READ 0 0 0 0 0.0000 0.0000 0.0000 0.0000
CONV 2 0 0 0 0.0300 0.0000 0.0000 0.0000
MINI 1 0 500000 0 0.0000 0.0000 0.0000 0.0000
last rows of the LOG file:
Iter= 1830 Move(A)= 0.014655 E(kJ/mol)= -308677.2 Grad= 1.050711
Iter= 1840 Move(A)= 0.006781 E(kJ/mol)= -308679.8 Grad= 0.3149876
Iter= 1850 Move(A)= 0.006795 E(kJ/mol)= -308682.0 Grad= 0.5379291
Iter= 1860 Move(A)= 0.000557 E(kJ/mol)= -308682.3 Grad= 0.2615195
Iter= 1870 Move(A)= 0.000002 E(kJ/mol)= -308682.3 Grad= 0.2595331
Total Energy = -308675.0625 kJ/mol
Stretch = 10237.7920 kJ/mol
Bend = 7214.5508 kJ/mol
Torsion = 57681.2422 kJ/mol
Improper Torsion = 2272.0823 kJ/mol
VDW = -39296.4414 kJ/mol
Electrostatic = -167802.2500 kJ/mol
Explicit Hydrogen Bonds = 0.0000 kJ/mol
Cross Terms = 0.0000 kJ/mol
Solvation = -178982.0312 kJ/mol
T.E. for cross-checking: -308675.0625 kJ/mol
Iterations = 1874 out of 500000
Conf 1 E =-99999.000 ( 0.260) kJ/mol
Total number of structures processed = 1
BatchMin: normal termination 19-Jun-2007 20:12:14
real 161m43.825s
user 152m41.667s
sys 8m37.178s
MACHID file:
SCHRODINGER: /home/bin/schrodinger
uname -a : Linux hydra.smin.unisi.it 2.4.21-4.ELsmp 1 SMP Fri Oct 3 17:52:56
EDT 2003 i686 i686 i386 GNU/Linux
Machine name: hydra
IP address: 172 16 83 7
Machine id: 244154412
lmutil - Copyright (c) 1989-2004 by Macrovision Corporation. All rights
reserved.
The FLEXlm host ID of this machine is "000d60d5beac"
OS: LINUX 2.4.21-4.ELsmp
Distribution: Red Hat Linux 3.2.3-20
CPU: i686
Processors: 2
perl: 5.008
glibc: 2.3.2
Product: macromodel-v86009-Linux-x86
Product: macromodel-v90016-Linux-x86
Product: macromodel-v91111-Linux-x86
Product: maestro-v65008-Linux-x86
Product: mmshare-v13007-Linux-x86
Product: mmshare-v14018-Linux-x86
Product: mmshare-v15112-Linux-x86