CCL: All small-molecule ligands in PDB are in the PDBbind-CN database
now
- From: "Renxiao Wang"
<wangrx!=!mail.sioc.ac.cn>
- Subject: CCL: All small-molecule ligands in PDB are in the
PDBbind-CN database now
- Date: Thu, 30 Oct 2008 02:15:39 -0400
Sent to CCL by: "Renxiao Wang" [wangrx(~)mail.sioc.ac.cn]
Dear researchers,
This message is to announce a new function implemented on the PDBbind-CN server.
The PDBbind database aims at providing a comprehensive collection of the
experimentally measured binding affinity data for all types of biomolecular
complexes deposited in the Protein Data Bank (PDB). The latest release of
PDBbind (version 2008) is currently available on the PDBbind-CN server at http://www.pdbbind.org.cn/. This release consists of binding
affinity data of a total of 4,300 protein-ligand, nucleic acid-ligand,
protein-nucleic acid, and protein-protein complexes.
On the PDBbind-CN server, substructure/similarity search of the chemical
structures of small-molecule ligands used to be limited to the ones with known
binding data. Now it has been expanded to all small-molecule ligands in PDB
(>8700 non-redundant molecules), a much larger body of information to
explore. You may use this new function on the "STRUCTURE" page by
selecting the "All small-molecule ligands in PDB" or the
"Non-redundant ligands in PDB" set for conducting search. Registration
is needed to access this page, but it is totally free to all users.
Thank you for your interests in our work! We also love to know your feedbacks.
The PDBbind-CN team
Shanghai Institute of Organic Chemistry
Chinese Academy of Sciences
Shanghai, P. R. China