CCL: translational entropy in solvent
- From: "Michael K. Gilson"
<gilson^-^umbi.umd.edu>
- Subject: CCL: translational entropy in solvent
- Date: Thu, 04 Dec 2008 13:39:59 -0500
Sent to CCL by: "Michael K. Gilson" [gilson[*]umbi.umd.edu]
There can be some real semantic issues here, but I think it's safe to
say that a correctly done solvation free energy calculation -- whether
implicit or explicit-- will not include a translational contribution
associated with the solute. There is no need at all for such a term in
a solvation free energy, whether approximate or exact. Here are some
more extended (i.e., rambling) comments.
The concept of an implicit solvent model can be cleanly derived from
statistical thermodynamics. See, e.g., Biophys. J. 72:1047-1069, 1994.
(I'm referring to my own work, not because it is necessarily best, but
because I'm most familiar with it.)
There, Eq. 5 gives the standard chemical potential of a molecule in
solution in terms of an integral that explicitly includes solvent
degrees of freedom. It is a "standard" chemical potential in
the sense
that, instead of allowing an arbitrary system volume of V, it
effectively integrates the motions of the solute molecule over a
"standard volume" equal to the reciprocal of the standard
concentration,
Co.
Eqs. 34-37 of the same paper then show how this chemical potential can
be rewritten in an implicit solvent form, where the solvent integrals
have not been discarded or approximated, but only mathemetically tucked
inside the solvation free energy as a function of solute conformation.
The form of this expression exactly matches what one would obtain for
an
ideal gas IF the solvent term were magically turned into part of the
potential energy and thereby lost its temperature dependence. In this
specific sense, then, the contribution of translation to the chemical
potential of a molecule in solution is, indeed, the same as what one
would obtain from an ideal gas model.
It's maybe more immediately relevant to point out that the solvation
free energy of the solute is equal to the difference between its
standard chemical potential in solution vs gas phase, where we have to
use the same standard concentration (e.g., 1 mol/liter) in both phases.
When this difference is taken, the contribution of translation (i.e.,
the contribution of Co) cancels entirely, so that there is no
translational contribution to the solvation free energy to worry about
in the first place. Hence my opening comment. (Actually, this
cancellation occurs for any concentration, so long as it is the same in
both phases and ideality is assumed.)
Note too, that, for a molecule at a given concentration in both
solution
and in gas phase, the spatial probability distribution function p(x) is
the same in both phases. Therefore, if one (somewhat simplistically)
writes the translational entropy as -R\int p(x)\ln p(x), one finds the
translational entropies are equal in both phases. Indeed, although
"solvent caging" certainly occurs in solution, it operates
only a short
time-scale; over the experimental time-frame, the solutes wander
freely. So, although "caging" presumably is a factor in the
solvation
free energy, I would not say it contributes to a translational term. It
should already be included in the model itself, perhaps via some kind
of
surface energy, scaled particle theory, etc.
Regards,
Mike