CCL: Computer Program for Enumeration of Kekule Structures.
- From: "Wolf-D. Ihlenfeldt" <wdi__xemistry.com>
- Subject: CCL: Computer Program for Enumeration of Kekule
Structures.
- Date: Tue, 7 Apr 2009 17:39:04 +0200
Sent to CCL by: "Wolf-D. Ihlenfeldt" [wdi ~ xemistry.com]
Use the Cactvs toolkit (www.xemistry.com/academic, free for academic users),
property E_KEKULESET. It gives you a symmetry-filtered exhaustive Kekulé
form structure set. There is an extensive manual which will help you to
script your specific task.
Interactive command line example:
cactvs>ens create c1(Cl)c(Cl)cccc1
ens0
cactvs>ens get ens0 E_KEKULESET
dataset1
cactvs>dataset ens dataset1
ens1 ens2
cactvs>molfile write "kekuleset.sdf" dataset1
ens1 ens2
There are two Kekulé forms for 1.2-dichlorobenzene, one with a single and
one with a double bond between the substituted carbons. Simple chlorobenzene
would only give you a single structure, because the forms with the double
bond to the left or to the right of the chlorine are topologically
equivalent.
W. D. Ihlenfeldt
Xemistry GmbH
wdi*xemistry.com
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> -----Original Message-----
> From: owner-chemistry+wdi==xemistry.com*ccl.net [mailto:owner-
> chemistry+wdi==xemistry.com*ccl.net] On Behalf Of Zahid Rashid
> Z.Rashid,,students.uu.nl
> Sent: Tuesday, April 07, 2009 2:28 PM
> To: Ihlenfeldt, Wolf D
> Subject: CCL: Computer Program for Enumeration of Kekule Structures.
>
>
> Sent to CCL by: "Zahid Rashid" [Z.Rashid[]students.uu.nl]
> Dear C.C. Researchers,
> I am looking for a computer program that can automatically generate all
> possible Kekule structures for
> a given polycyclic (alternant) aromatic hydrocarbon. If anybody have or
> know about such a program
> please let me know. Thanks.
>
> Z.Rashid(-)students.uu.nl
>
>