CCL:G: Help in freezing the coordinates in a Gaussian input file.



Dear KS
I have another idea if you have GaussView and hope to hear your comment on it.
Open your molecule using GaussView, then open Atom List Editor, Click on "Oniom data" under "Columns". By these, you will get a colum called "Freeze". All values in these colums are set to zero, menas free to optimize. you can change this value to -1 (or other negative values) for all atoms you want to freeze.
After you finish, press "Cntrl + G" and choose method and tick "Multiply Oniom Layer". And press submit, it will ask you to save, press yes and save your input file and then after Saving, cancel the submission job.
now, open your saving input file, and cut your atom coordinates and paste it in your ready files for submission (you DON^-^T need to define ONIOM method in your route section).
That's all.
This is the most easy way to freeze alot of atoms in your system, we use it in ONIOM methods, but it works (with me) for other systems.
Sincerely;
M. Ibrahim


Mahmoud A. A. Ibrahim

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--- On Tue, 6/9/09, Close, David M. CLOSED:_:mail.etsu.edu <owner-chemistry^-^ccl.net> wrote:

From: Close, David M. CLOSED:_:mail.etsu.edu <owner-chemistry^-^ccl.net>
Subject: CCL:G: Help in freezing the coordinates in a Gaussian input file.
To: "Ibrahim, Mahmoud A. A. " <m.ibrahim1982^-^yahoo.com>
Date: Tuesday, June 9, 2009, 3:09 PM


Sent to CCL by: "Close, David M." [CLOSED]|[mail.etsu.edu]
The Gaussian manual has a good discussion of the ModRedundant command
under the keyword OPT.
You don't say just what you want to freeze.  But you have the option of
freezing bond lengths, bond angles, and torsion angles.  Just pick out
what you want to freeze, and type the frozen coordinates in a separate
section of the input file just after the geometry specifications.  Add
the letter F (for frozen).  For example if atom 4 is bonded to atom 5,
and you want this frozen at 1.50 A, type 5 4 1.50 F.  There are useful
ways of freezing all bond lengths with * *, etc.
Another approach is to do a partial optimization (POPT) and separate the
geometries into two lists, Variables: and Constants:

Regards, Dave Close.

-----Original Message-----
> From: owner-chemistry+closed==etsu.edu_._ccl.net
[mailto:owner-chemistry+closed==etsu.edu_._ccl.net] On Behalf Of raj s k
cclselva]^[gmail.com
Sent: Tuesday, June 09, 2009 7:05 AM
To: Close, David M.
Subject: CCL:G: Help in freezing the coordinates in a Gaussian input
file.


Sent to CCL by: "raj s k" [cclselva^-^gmail.com]
Hi,
Can anyone explain (with the syntax) how to freeze the coordinates of a
few atoms in a model in Gaussian input file ? I have about 30 atoms in a

model and about 24 atoms have be frozen before an optimization process.
It would be ideal if anyone can paste the text of an example Gaussian
input
file wherein few atomic coordinates are frozen.
Thanks
ks



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