CCL: solvation energy in mopac
- From: Andreas Klamt <klamt- -cosmologic.de>
- Subject: CCL: solvation energy in mopac
- Date: Wed, 21 Oct 2009 08:18:57 +0200
Sent to CCL by: Andreas Klamt [klamt#%#cosmologic.de]
Dear Daniel,
as author of COSMO in MOPAC I like to emphazise that the COSMO in
MOPAC
is not parameterized for the quantitative calculation of dG_solv. It is
definitely good for getting the calculations closer to solvation than
just a gasphase calculation, but for two reasons I recommend higher
levels for optimal calculation of dG_solv:
1) The electrostatics of semi-empirical methods is usually not very
accurate (because this mostly is not in the target properties of the
parameterizations). At least in AM1, PM3, and PM5 (we did not test PM6)
dipole moments of some functional groups can be off by one Debye (e.g.
nitro groups) and if the dipole moment is of that much the solvation
energy will be very bad. This is the reason why I left the
semi-empirical level for quantitative solvation calculations a few
years
after developing COSMO in MOPAC. And most likely this is also why the
Minnesota group developed parameterized charge models based on
semi-empirical methods in order to improve the SMx models. Since HF is
generally overestimating polarities, this is also not extremely
reliable. The good message is that DFT is very reliable in that regard,
and this quite independent of the special functional. From my
perspective DFT is currently the method of choice, although for getting
the solvations energies much better than 0.3 kcal/mol one will need
even
more accurate methods than DFT. By the way, a semi-emirical geometry
furnished with a single point DFT calculation can be a very good choice
for calculating solvation energies.
2) The second reason is that a dielectric continuum solvation model
alone cannot give the complete solvation free energies. One needs in
addition "non-electrostatic contributions". While in the SMx
and PCM
models these have been parameterized with many additional, solute and
solvent specific parameters and descriptors, I have never implemented
such non-electrostatic terms in MOPAC, at least not quantitatively.
MOPAC/COSMO thus does not have these terms. Instead, I have attacked
this question with the much more rigorous COSMO-RS approach, which
combines COSMO with a statistical thermodynamics of interacting
surfaces
(using the COSMO polarization charges for the quantification of the
interactions) and thus describes solutes and solvents on the same
quantum-chemical footing, gives enthalpies and entropies, temperature
dependencies, and allows for the treatment of mixtures. But due to the
earlier finding of 1) I have only developed COSMO-RS quantitatively on
the DFT level. Based on a comparison on ~ 2500 dG_solv predictions (see
"On the Performance of Continuum Solvation Methods. A Comment on
"Universal Approaches to Solvation Modeling"", Acc.
Chem. Res., 2009, 42
(4), pp 489--492) and on the outcome of the recent SAMPL blindtest (
publications in preparation) I dare to say that COSMO-RS currently is
the most accurate method for the prediction of dG_solv.
Andreas
Daniel Glossman-Mitnik dglossman%a%gmail.com schrieb:
Dear netters:
How should one calculate the solvation energy of a given molecule
using MOPAC 2009?
It is enough with doing one calculation in gas phase and another in
solvent and then
substracting both heats of formation?
Any example input related to these questions will be appreciated.
Best regards,
Daniel
*************************************************************************************************************
Dr. Daniel Glossman-Mitnik:
Centro de Investigación en Materiales Avanzados, SC
Grupo NANOCOSMOS - Nanotecnología Computacional, Simulación
y Modelado
Molecular
Miguel de Cervantes 120 - Complejo Industrial Chihuahua - Chihuahua,
Chih 31109, Mexico
Phone: +52 614 4391151 Secretary/FAX: +52 614 4394852 Lab: +52 614 4394805
E-mail: daniel.glossman[A]cimav.edu.mx
<mailto:daniel.glossman%5BA%5Dcimav.edu.mx>
dglossman[A]gmail.com
<mailto:dglossman%5BA%5Dgmail.com>
WWW: http://www.cimav.edu.mx/cv/daniel.glossman
http://blogs.cimav.edu.mx/daniel.glossman
*************************************************************************************************************
--
PD. Dr. Andreas Klamt
CEO / Geschäftsführer
COSMOlogic GmbH & Co. KG
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