CCL: software to list chi1 angles
- From: "Elaine Meng" <meng^^^cgl.ucsf.edu>
- Subject: CCL: software to list chi1 angles
- Date: Sun, 7 Feb 2010 11:59:09 -0500
Sent to CCL by: "Elaine Meng" [meng*o*cgl.ucsf.edu]
Hi Reynier,
In Chimera, you could do this by
(a) opening the protein structure ("File... Open" or "File...
Fetch by ID")
(b) choosing "Tools... Depiction... Render by Attribute"
(c) from the Render dialog, choosing "File... Save Attributes"
(d) in that file save dialog, specify saving Attribute: of "residues"
(instead of "atoms") named "chi1", output filename and
location
That gives a plain text file with contents like:
attribute: chi1
recipient: residues
:1.A 155.14827579618091
:2.A 173.65904867904251
:3.A 161.03647418613772
:4.A -61.545841796253114
[... etc.]
Chimera is free for noncommercial use. For info and download see
http://www.cgl.ucsf.edu/chimera/index.html
Elaine
-----
Elaine C. Meng, Ph.D.
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco