CCL: Find a protein with specified repeat patterns
- From: "Arun Sharma" <aksharma,,usc.edu>
- Subject: CCL: Find a protein with specified repeat patterns
- Date: Fri, 21 Jan 2011 18:08:36 -0500
Sent to CCL by: "Arun Sharma" [aksharma(-)usc.edu]
Hello List,
I want to find proteins which contain specified repeat patterns like Ala-Ala-Ala
and specify how many such patterns should be present in the structure.
Does anybody know if there are any websites or programs which allow discovery of
proteins in this fashion from the PDB database.
I've looked at SCOP, CATH, ProtoNet, etc. but none of them does exactly what I
need.
Thank you,
Arun.