CCL: CAS number to Chemdraw Molecular Structures
- From: "Tamas Gunda" <tgunda2#puma.unideb.hu>
- Subject: CCL: CAS number to Chemdraw Molecular Structures
- Date: Tue, 17 Apr 2012 14:27:45 +0200
Sent to CCL by: "Tamas Gunda" [tgunda2 * puma.unideb.hu]
When using the Molgrabber module of ChemDoodle, on entering a CAS
number
you'll get back immediately the structure via Pubchem. You can save it
as
ChemDraw cdx file from within ChemDoodle (www.chemdoodle.com)
Tamas Gunda
=====================================================================
From: Need47 need47..gmail.com
Sent: Monday, April 16, 2012 22:35 PM
To: Gunda, Gunda
Subject: CCL: CAS number to Chemdraw Molecular Structures
Hi,
Not sure whether this would help by looking up CAS via the PubChem database:
Given a CAS number, say 205692-63-3
Step 1: look up the compound identifier (CID) in the Compound database
of
the PubChem using
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=205692-63-3
.
This would return an XML file (which is simple to parse) that contains
the
CID ( 5245728 in this case) if there was a successful retrieval.
Step 2: with a single CID or a list of CIDs, you can use the Download
tool
(http://pubchem.ncbi.nlm.nih.gov/pc_fetch/pc_fetch.cgi)
provided at PubChem
to get various structure formats such as SDF at SMILES
Step 3: write a script to batch it up.
Tiejun
On Mon, Apr 16, 2012 at 2:09 PM, S SC lcqsigi]~[hotmail.com
<owner-chemistry!=cl.net> wrote:
Sent to CCL by: "S SC" [lcqsigi/a\hotmail.com]
Dear all,
Is there a freeware that is able to convert CAS numbers into
Chemdraw-like
molecular structures.
That is I am looking for a software that can translate CAS numbers
into the
chemical structures that are used in published papers (i.e., the 2D
structures depicted by the pubchem database).
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