From owner-chemistry@ccl.net Sun Nov  4 10:37:01 2012
From: "Muhammed mbtemiz3_+_gmail.com" <owner-chemistry(!)server.ccl.net>
To: CCL
Subject: CCL: Compiling GAMESS 1 MAY 2012 Linux Mint 13
Message-Id: <-47839-121104095805-19251-bFLYceU1kZeMs5aVxb2XOA(!)server.ccl.net>
X-Original-From: Muhammed <mbtemiz3#,#gmail.com>
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Date: Sun, 4 Nov 2012 16:57:40 +0200
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Sent to CCL by: Muhammed [mbtemiz3]![gmail.com]
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Lee,
I've also encountered with the same error on one of our linux 64 bit
servers (not mint thou). In lked file there is an explanation for that.

>    " Some versions of Atlas come without proper setup to use them.
>       #     For example, you may need to give some specific version such
>       #     as 3.0 some generic names, by doing the right soft links:
>       #          chdir /usr/lib64/atlas   (just 'lib' for linux32)
>       #          ln -s libatlas.so.3.0        libatlas.so ...
>       .
>       .


You just have to link atlas library files as shown in the lked file and
replace the line below

>  else
>          set MATHLIBS="-L$GMS_MATHLIB_PATH -lf77blas -latlas"

to

>  else
>          set MATHLIBS="-Lhome/atlas/lib/link/path -lf77blas -latlas"


Hope it helps.
mb.



-- 
Muhammed Buyuktemiz
Chemistry Department, Gazi University
+90 554 844 11 25

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Lee,<div>I&#39;ve also encountered with the same error on one of our linux =
64 bit servers (not mint thou). In lked file there is an explanation for th=
at.=A0</div><blockquote class=3D"gmail_quote" style=3D"margin:0px 0px 0px 0=
.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-s=
tyle:solid;padding-left:1ex">

=A0 =A0&quot;=A0Some versions of Atlas come without proper setup to use the=
m.<br>=A0 =A0 =A0 # =A0 =A0 For example, you may need to give some specific=
 version such<br>=A0 =A0 =A0 # =A0 =A0 as 3.0 some generic names, by doing =
the right soft links:<br>

=A0 =A0 =A0 # =A0 =A0 =A0 =A0 =A0chdir /usr/lib64/atlas =A0 (just &#39;lib&=
#39; for linux32)<br>=A0 =A0 =A0 # =A0 =A0 =A0 =A0 =A0ln -s libatlas.so.3.0=
 =A0 =A0 =A0 =A0libatlas.so ...<br>=A0 =A0 =A0 .<br>=A0 =A0 =A0 .=A0</block=
quote>

<div><br></div><div>You just have to link atlas library files as shown in t=
he lked file and replace the line below</div><div><blockquote class=3D"gmai=
l_quote" style=3D"margin:0px 0px 0px 0.8ex;border-left-width:1px;border-lef=
t-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">

=A0else<br>=A0 =A0 =A0 =A0 =A0set MATHLIBS=3D&quot;-L$GMS_MATHLIB_PATH -lf7=
7blas -latlas&quot;</blockquote></div><div>to</div><blockquote class=3D"gma=
il_quote" style=3D"margin:0px 0px 0px 0.8ex;border-left-width:1px;border-le=
ft-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">

=A0else<br>=A0 =A0 =A0 =A0 =A0set MATHLIBS=3D&quot;-Lhome/atlas/lib/link/pa=
th -lf77blas -latlas&quot;</blockquote><div><br></div><div class=3D"gmail_e=
xtra">Hope it helps.<br>mb.</div><div class=3D"gmail_extra"><br><div class=
=3D"gmail_quote">

<br></div><div><br></div>-- <br><span style=3D"font-family:arial,sans-serif=
;font-size:13px;border-collapse:collapse;color:rgb(136,136,136)">Muhammed B=
uyuktemiz</span><br><div><span style=3D"font-family:arial,sans-serif;font-s=
ize:13px;border-collapse:collapse;color:rgb(136,136,136)">Chemistry Departm=
ent,=A0Gazi University=A0</span></div>


<div><font color=3D"#888888" face=3D"arial, sans-serif"><a href=3D"tel:%2B9=
0%20554%20844%2011%2025" value=3D"+905548441125" target=3D"_blank">+90 554 =
844 11 25</a>=A0</font></div><br>
</div>

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