CCL: Why Chlorine atom is more hydrophobic than Hydrogen
- From: Andreas Klamt <klamt{:}cosmologic.de>
- Subject: CCL: Why Chlorine atom is more hydrophobic than
Hydrogen
- Date: Thu, 24 Jan 2013 05:30:50 +0100
Sent to CCL by: Andreas Klamt [klamt%%cosmologic.de]
Hi Mannan,
this can be quite nicely explained within COSMO-RS theory. Basically
the interactions in liquids are surface contacts. Hydrophobicity is
sloppy expression for the fact that water does not like to make
contayts
to non- or slightly polar surface area. By the way, this is an entropic
effect, because the really polar parts of water essentially will make
no
contacts to slightly polar surfaces, and the free high free energy of
contact results from the entropy loss which goes along with placing the
few "green" (in COMSO-RS the non-polar surface is colored in
green)
surface pieces of water on the non-polar solute surface area.
Anyway, the larger the non-polar surface area, the more of the green
water patches are required as contact partners and the higher the
"hydrophobic" costs. And since the vdW-radius of hydrogen is
~ 1.1
Angstrom, and that of Chlorine is ~ 1.7, the exposed non-polar surface
area of chlorine is much larger than that of hydrogen.
Best regards
Andreas
Am 23.01.2013 15:36, schrieb Mannan K malie_03(0)yahoo.co.in:
Sent to CCL by: "Mannan K" [malie_03|*|yahoo.co.in]
Hi CCLers,
Chlorine/Fluorine atoms are commonly used to influence the hydrophobic contact
in small molecule design.
But how the hydrophobicity is being measured for halogen atoms with reference to
Hydrogen atom?
How Molar refractivity and steric paramemters are connected to hydrophobicity of
an atom?
Thanks in Advance,
Mannan>
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