CCL: Workshop on Computational Biophysics (Berkeley, Aug 3-7, 2015)
- From: Kristopher Keipert <kwk*_*iastate.edu>
- Subject: CCL: Workshop on Computational Biophysics (Berkeley, Aug
3-7, 2015)
- Date: Wed, 20 May 2015 16:36:48 -0500
Are you sure a discrete graphics card is required?
"Graphics card: nVidia Geforce Ti4600, or comparable"
The integrated graphics offerings from AMD and Intel have surpassed the
performance of the Ti4600 for at least 5 years and definitely meet the
minimum requirements from a performance standpoint. It looks like they're
suggesting minimum hardware requirements to run VMD and NAMD, which is easy
enough to test.
On Wed, May 20, 2015 at 1:44 PM, Billy McCann thebillywayne_+_gmail.com <
owner-chemistry!=!ccl.net> wrote:
>
> Sent to CCL by: Billy McCann [thebillywayne[A]gmail.com]
> Hello.
>
> This looks like a very exciting opportunity.
>
> If you would indulge me, I have a few words.
>
> One item in particular about this workshop is somewhat unfortunate for
> me, that is, the laptop hardware requirements.
>
> The workshop requires participants to bring their own laptop. This is
> understandable. The hardware requirements for the laptop requires a
> discrete GPU. This also is understandable. However, such laptops do
> not come cheaply.
>
> I grant that the specifications listed represent technology that is
> more than a decade old. Perhaps an older, inexpensive laptop with
> these specs or better could be bought from ebay or craigslist? These
> sites are patronized for technology with "caveat emptor" writ
large.
>
> This requirement alone keeps me from even applying.
>
> I, like many other chemists at the beginning of their scientific
> careers, am competing with an ever increasing number of colleagues for
> very few available positions and grant money that shrinks year by
> year. Some of us simply won't make it. Fact. You are holding this
> workshop in August, a time approximately when some of us are facing
> the end of our contracts and whose future employment is still dubious.
> The acquisition of laptops with a discrete GPU (sometimes referred to
> as "gaming laptops") will probably take priority far below the
> securing of food, shelter, clothing, and medicine.
>
> I apologize for the rant. But certain aspects of remaining competitive
> in computational chemistry simply strike an all-too-sensitive nerve
> for me. Perhaps I'm over reacting. Perhaps it's that I'm frustrated
> at the state of job seeking in chemistry. Perhaps I'm frustrated
> because of the frequency at which I'm advertised such workshops,
> workshops that I would love to attend and that I know would help me
> progress towards my long-term scientific goals (yours in particular
> does), but the limiting reagent in the reaction is money. Always
> money.
>
> This ends my words. I may be alone in the sentiments that I've
> expressed here. But I have a hunch that I'm not alone.
>
>
> For your consideration,
>
> Billy Wayne McCann, Ph.D.
>
>
> --
> Billy Wayne McCann, Ph.D.
> irc://irc.freenode.net:bwayne
>
> Plays, farces, spectacles, gladiators, strange beasts, medals,
> pictures, and other such opiates, these were for ancient peoples the
> bait toward slavery, the price of their liberty, the instruments of
> tyranny. By these practices and enticements the ancient dictators so
> successfully lulled their subjects under the yoke, that the stupefied
> peoples, fascinated by the pastimes and vain pleasures flashed before
> their eyes, learned subservience as naively, but not so creditably, as
> little children learn to read by looking at bright picture books.
> Roman tyrants invented a further refinement. They often provided the
> city wards with feasts to cajole the rabble, always more readily
> tempted by the pleasure of eating than by anything else. The most
> intelligent and understanding amongst them would not have quit his
> soup bowl to recover the liberty of the Republic of Plato. Tyrants
> would distribute largess, a bushel of wheat, a gallon of wine, and a
> sesterce: and then everybody would shamelessly cry, 'Long live the
> King!' The fools did not realize that they were merely recovering a
> portion of their own property, and that their ruler could not have
> given them what they were receiving without having first taken it from
> them.
> ~Juvenal
>
>
>
>
> On Tue, May 19, 2015 at 11:54 PM, Lela Vukovic Lvukov1/aillinois.edu
> <owner-chemistry%a%ccl.net> wrote:
> >
> > Sent to CCL by: "Lela Vukovic" [Lvukov1(~)illinois.edu]
> > The Theoretical and Computational Biophysics Group, NIH Resource for
> > Macromolecular Modeling and Bioinformatics (www.ks.uiuc.edu) at the
> > University of Illinois at Urbana-Champaign (www.uiuc.edu), announces a
> >
> > "Hands-On" Workshop on Computational Biophysics
> >
> > http://www.ks.uiuc.edu/Training/Workshop/Berkeley2015/
> >
> > to be held August 3-7, 2015 at the University of California Berkeley.
> Application, selection, and
> > notification of participants is on-going through July 15, 2015.
> >
> > The workshop will explore physical models and computational approaches
> used for the
> > simulation of biological systems and the investigation of their
function
> at an atomic level. The
> > course will be based on case studies, and will cover the following
> topics: using the biophysics
> > software VMD and NAMD, applications of VMD and NAMD in modern
research,
> force fields
> > and parameterizing new molecules, modeling nucleic acid systems,
> computational nano-bio,
> > molecular dynamics flexible fitting of structures into cryo electron
> microscopy maps, and
> > refinement of low resolution crystal structures. Relevant physical
> concepts, mathematical
> > techniques, and computational methods will be introduced.
> >
> > The workshop is designed for graduate students and postdoctoral
> researchers in
> > computational and/or biophysical fields who seek to extend their
> research skills to include
> > computational and theoretical expertise, as well as other researchers
> interested in theoretical
> > and computational biophysics. Theory sessions in the morning will be
> followed by hands-on
> > computer labs in the afternoon in which students will be able to set
up
> and run simulations.
> > Enrollment limited to 24 participants. The workshop will be held
August
> 3-7, 2015. All
> > participants are required to bring their own laptop, prepared for use
in
> workshop tutorial
> > sessions. Course materials will be provided.
> >
> > The workshop is sponsored by the National Institute of General Medical
> Sciences
> > (www.nigms.nih.gov) and the NIH Center for Macromolecular Modeling and
> Bioinformatics.
> >
> > We look forward to receiving your application!
> >
> > TCBG Workshop Organizers
> > Email: workshop+berkeley2015^-^ks.uiuc.edu>
>
>