CCL: The use of NMR spectra computations for verification of computational
method
- From: Frank Jensen <frj|a|chem.au.dk>
- Subject: CCL: The use of NMR spectra computations for verification
of computational method
- Date: Tue, 22 Sep 2015 17:21:46 +0000
Sent to CCL by: Frank Jensen [frj++chem.au.dk]
A few selected references for a start:
> From CCSD(T)/aug-cc-pVTZ-J to CCSD(T) complete basis set limit isotropic
nuclear magnetic shieldings via affordable DFT/CBS calculations
By: Kupka, Teobald; Stachow, Michal; Nieradka, Marzena; et al.
MAGNETIC RESONANCE IN CHEMISTRY Volume: 49 Issue: 5 Pages: 231-236
Published: MAY 2011
Benchmarking Hydrogen and Carbon NMR Chemical Shifts at HF, DFT, and MP2 Levels
By: Flaig, Denis; Maurer, Marina; Hanni, Matti; et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION Volume: 10 Issue: 2 Pages:
572-578 Published: FEB 2014
Benchmarking density-functional theory calculations of NMR shielding constants
and spin-rotation constants using accurate coupled-cluster calculations
By: Teale, Andrew M.; Lutnaes, Ola B.; Helgaker, Trygve; et al.
JOURNAL OF CHEMICAL PHYSICS Volume: 138 Issue: 2 Article Number: 024111
Published: JAN 14 2013
Segmented Contracted Basis Sets Optimized for Nuclear Magnetic Shielding
By: Jensen, Frank
JOURNAL OF CHEMICAL THEORY AND COMPUTATION Volume: 11 Issue: 1 Pages:
132-138 Published: JAN 2015
Frank
Frank Jensen
Assoc. Prof., Vice-Chair
Dept. of Chemistry
Aarhus University
http://old.chem.au.dk/~frj
-----Original Message-----
> From: owner-chemistry+frj==chem.au.dk^-^ccl.net [mailto:owner-chemistry+frj==chem.au.dk^-^ccl.net] On Behalf Of Grigoriy
Zhurko reg_zhurko : chemcraftprog.com
Sent: 22. september 2015 16:12
To: Frank Jensen
Subject: CCL: The use of NMR spectra computations for verification of
computational method
Sent to CCL by: Grigoriy Zhurko [reg_zhurko||chemcraftprog.com]
> Sent to CCL by: Frank Jensen [frj * chem.au.dk] One cannot help
> wondering why people still are using B3LYP/6-31G* as the answer to any
question.
> For NMR shielding, there are better functionals and basis sets optimized
specifically for NMR.
> Using such a combination will have essentially the same computational
> cost, and who knows, may even solve problems like the one posed.
1) So, what are these functionals and basis sets?
2) I still need to know, whether the B coefficient in Y=A+B*X equation of the
correlation must be equal 1.
> Frank
> Frank Jensen
> Assoc. Prof., Vice-Chair
> Dept. of Chemistry
> Aarhus University
> http://old.chem.au.dk/~frj
> -----Original Message-----
>> From: owner-chemistry+frj==chem.au.dk::ccl.net
>> [mailto:owner-chemistry+frj==chem.au.dk::ccl.net] On Behalf Of
>> Grigoriy Zhurko reg_zhurko^chemcraftprog.com
> Sent: 21. september 2015 19:20
> To: Frank Jensen
> Subject: CCL: The use of NMR spectra computations for verification of
> computational method
> Sent to CCL by: Grigoriy Zhurko [reg_zhurko^chemcraftprog.com] I have
> been computing NMR spectra of several organic compounds, comparing
> them with the experiment. Usually these computations show big
> systematic errors, but correlate well with the experiment (for
> C13 spectra of organic molecules, I got the correlation coefficient R
> about 0.9995 with B3LYP/6-311G(D,P) method).
> Now I have computed some NMR spectra of bilirubin molecule with
> different DFT functionals, and I found that the correlation
> coefficient is not a good criteria of computation accuracy in my case.
> This molecule has internal hydrogen bonds, and different functionals
> (in particular, B3LYP and PBE) give quite different O..H distance (the
> difference is about 0.1 A), while other bond lengths in this molecule
> do not differ significantly (the difference is
> 0.012 A or less). The PMR spectrum with B3LYP correlates with the
> experimental one with R=0.997, and with PBE ? R=0.995. These values do
> not differ very much. But the coefficient B in the equation Y=A+B*X
> (for the linear approximation of experiment vs theory graph) is 1.02
> for B3LYP, and 1.14 for PBE. So, with PBE it is far less from 1. Does
> that mean that PBE is much less appropriate method for this task?
> I suppose, that the systematic error of absolute values of the NMR
> chemical shifts is caused by unclear physical meaning of these
> chemical shifts and shieldings (maybe the solvent gives some
> additional shielding in experiment). So, my question is, whether the B
> coefficient in correlation must be always equal 1. If yes, then
> instead of correlation coefficients R I should use another criteria of
> computation accuracy ? the RMS of MAE difference between the computed
> and experimental chemical shifts, if the shielding of the standard
> (TMS) simply fitted for best agreement (not computed
> quantum-chemically). Is that correct? In my case, these MAE difference
> must be much bigger for PBE functional, than for the B3LYP functional.http://www.ccl.net/cgi-bin/ccl/send_ccl_messagehttp-:-//www.ccl.net/chemistry/sub_unsub.shtmlhttp-:-//www.ccl.net/spammers.txt