CCL: Isosurface representation of VSCC
- From: "Tian Lu" <sobereva**sina.com>
- Subject: CCL: Isosurface representation of VSCC
- Date: Fri, 14 Feb 2020 09:01:35 -0500
Sent to CCL by: "Tian Lu" [sobereva-,-sina.com]
Dear Tobias,
You can use Multiwfn to calculate grid data of Laplacian of electron density and
directly visualize its isosurface, see example in Section 4.5.2 of Multiwfn
manual.
Furthermore, if you want to obtain better graphical effect, you can export the
grid data as cube file via corresponding option in post-process menu of
Multiwfn, then you can use e.g. VMD and ChimeraX to render it as isosurface, as
illustrated in Section 4.A.14 of Multiwfn manual and this video tutorial: https://youtu.be/vC48iEB8PwI, respectively.
--------------------------------
Best regards,
Dr. Tian Lu
Beijing Kein Research Center for Natural Sciences, Beijing, P. R. China
http://www.keinsci.com
----- Original Message -----
> From: "Tobias Kraemer tobias.kraemer]~[mu.ie"
<owner-chemistry-x-ccl.net>
To: "Lu, Tian " <sobereva-x-sina.com>
Subject: CCL: Isosurface representation of VSCC
Date: 2020-02-14 21:23
Sent to CCL by: "Tobias Kraemer" [tobias.kraemer*mu.ie]
Dear all,
I have a question for those of you with experience in QTAIM analysis, in
particular the Laplacian topology. I have seen a number of of publications
that showed isosurface representations of the Valence-Shell Charge
Concentration (VSCC) regions around a specific atom (in a molecule), nicely
highlighting bonding (bcc) and lonepair (nbcc) regions. One such example
can be found in Stalke's paper Organometallics, 2008, 27, 2306. I have been
playing around with some model systems and the AIMALL software, and whilst
I was able to figure out how to perform a topological analysis of the
Laplacian itself, it is not clear to me how to visualise these VSCC regions
as envelope surfaces. As far as I understand this is not simply a 3D plot
of the Laplacian (or L(rho) function), but I might be wrong.
Could anybody give me some advise which programs can do this and how it is
done? I'd be curious to learn this and appreciate your help.
Kind regards,
Tobias