CCL:G: Quantum chemistry interoperability library?
- From: Geoffrey Hutchison <geoff.hutchison(0)gmail.com>
- Subject: CCL:G: Quantum chemistry interoperability library?
- Date: Thu, 30 Dec 2021 08:51:01 -0500
This was at least part of the point of the QC JSON schema.
MolSSI sponsored at least one workshop where this was discussed and a draft was
written.
At that workshop several years ago, in which many developers, including quantum
programs (NWChem, Q-Chem, Psi4, Molpro, GAMESS .. I know pretty much the entire
community was invited), analysis programs (Horton), community programs (cclib,
Open Babel, Avogadro, Jmol, etc.) were there. It was a big enough meeting that
I'm sure I missed some people.
Issues of normalization, metadata, input files (e.g. keywords), program-specific
features, etc were all discussed.
The idea was to first get out a "better Molden" interchange.
So if you (personally) and/or MolSSI want to push this again, it would be great.
Perhaps either a virtual meeting or discussion forum can get things moving
again?
Cheers,
-Geoff
P.S. The work and some discussion is here: https://github.com/MolSSI/QCSchema
---
Prof. Geoffrey Hutchison
Department of Chemistry
University of Pittsburgh
tel: (412) 648-0492
email: geoffh[*]pitt.edu
twitter: [*]ghutchis
web: https://hutchison.chem.pitt.edu/
> On Dec 29, 2021, at 8:01 PM, Susi Lehtola susi.lehtola[A]alumni.helsinki.fi
<owner-chemistry[*]ccl.net> wrote:
>
>
> Sent to CCL by: Susi Lehtola [susi.lehtola{=}alumni.helsinki.fi]
> Hello,
>
>
>
> I am again hitting my head against the wall, since I am having trouble
> passing data from one quantum chemistry code to another.
>
> What we are missing as a community is a standard interoperability
> library for passing basis set and wave function data from one program to
> another. The de facto standard is GAUSSIAN's formatted checkpoint
> library, but it also has some deficiencies; for instance, it's not
> machine precision.
>
> Because the library should store all the necessary data for at least SCF
> wave functions, that is, the Gaussian basis set and the molecular
> orbitals (MOs) and their occupation numbers, an interface to this
> library could also serve as a tool for checkpointing calculations that
> have not converged.
>
> Some pieces of the necessary functionality are certainly around. Many
> quantum chemistry programs have implemented their own formatted
> checkpoint i/o functions. Quantum chemistry analysis programs have
> needed to implement their own parsers for the .fchk / MOLDEN / etc formats.
>
> I do not think that writing such a common interface library should be
> too difficult. All that is needed is
>
> 1. a data structure that is able to express the data in a common format and
>
> 2. input and output functions to translate the data from/to specific
> quantum chemistry code formats.
>
> In addition to the .fchk and molden formats, the common interface
> library should also be able to read various programs' native data files
>> from disk, like DENS and XDENS in TURBOMOLE.
>
> Since many pieces of the puzzle are already around, and the problem
> affects the whole community, I would like to get everyone's feedback on
> this idea.
>
> If there was, say, a portable open-source C++ library with C, Fortran
> and Python frontends for handling molecular wave function data, would
> you be willing to use it in your own program package? What kinds of
> features would you need in it? Does such a library already exist?
>
> Susi
>
> PS. I work as a Software Scientist at the Molecular Sciences Software
> Institute at Virginia Tech (http://molssi.org), but I am sending this
> message from my Helsinki address since it's what I've used here for
> close to a decade.
> --
> ------------------------------------------------------------------
> Mr. Susi Lehtola, PhD Adjunct Professor
> susi.lehtola##alumni.helsinki.fi University of Helsinki
> http://susilehtola.github.io/ Finland
> ------------------------------------------------------------------
> Susi Lehtola, FT dosentti
> susi.lehtola##alumni.helsinki.fi Helsingin yliopisto
> http://susilehtola.github.io/
> ------------------------------------------------------------------
>
>
>
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