CCL:G: keep bond aligned along an axis during geometry optimization in
G16
- From: Frank Jensen <frj^^chem.au.dk>
- Subject: CCL:G: keep bond aligned along an axis during geometry
optimization in G16
- Date: Thu, 5 Dec 2024 21:43:08 +0000
Sent to CCL by: Frank Jensen [frj~~chem.au.dk]
I can think of two options:
1) Fix the Cartesian coordinate of one atom at 0,0,0 using the geom=addredundant
or opt=addredundant option, place the second atom along the z-axis, and turn off
symmetry by using the nosymm keyword. This may fail if you are having a 'large'
molecule and/or not a field along the z-axis and performing an optimization, as
the optimization can break the z-alignment.
2) Construct a z-matrix where all your constraint variables are explicitly
defined, turn off symmetry (nosymm) and use opt=z-matrix to perform the
optimization in your defined internal coordinates. By using a proper amount of
dummy atoms (= points in space) and splitting your variables into variable
(=optimizable) and fixed (= non optimizable) sets, this should do the trick.
Frank
Frank Jensen
Assoc. Prof.
Department of Chemistry
Aarhus University
https://tildeweb.au.dk/au23758/
https://pure.au.dk/portal/en/frj!A!chem.au.dk
-----Original Message-----
> From: owner-chemistry+frj==chem.au.dk!A!ccl.net
<owner-chemistry+frj==chem.au.dk!A!ccl.net> On Behalf Of Theo de Bruin
theodorus.de-bruin]-[ifpen.fr
Sent: Thursday, December 5, 2024 4:25 PM
To: Frank Jensen <frj!A!chem.au.dk>
Subject: CCL:G: keep bond aligned along an axis during geometry optimization in
G16
Sent to CCL by: "Theo de Bruin" [theodorus.de-bruin * ifpen.fr] Dear
all,
I want to study the impact of an electric field on specific bond a molecule.
Therefore, I have aligned that bond along the Z-axis, but during the geometry
optimization, the molecule gets reorientated (-> standard orientation) and
the bond is not aligned anymore to the axis of the Efield.
The most intuitive way to correct this, would be to freeze the Cartesian
coordinates of one atom at (0,0,0) and freeze x=0.0 and y=0.0 for the 2nd atom
of the bond.
Yet, Gaussian does not allow to do this, or at least I don't know the right
syntax for this.
Do you have any suggestions that conserve the alignment during geometry
optimizations in Gaussian 16?
Thanks in advance,
Best regards, Theohttp://www.ccl.net/cgi-bin/ccl/send_ccl_messagehttp-:-//www.ccl.net/chemistry/sub_unsub.shtml/http-:-//www.ccl.net/spammers.txt