How to get started
------------------
To get more information about the installation read the documentation
in man/viewmol.html or man/viewmol.pdf. Precompiled binaries can be found
as additional tgz-files at the same place where this file has been found.
Binaries are available for a number of operating systems. For Linux
there are binaries linked with shared libraries as well as binaries
where Motif has been statically linked. These binary distributions should
be unpacked from the same directory this file was unpacked. They will
then install the binaries in viewmol-2.2.1/source/ where
is the name of your OS (the output of the uname -s command) and a possible
extension specifying your CPU. If you are using a different, but binary
compatible CPU (e.g. MIPS R8000 or R10000 instead of R5000) please rename
the directory accordingly - otherwise Viewmol will not be able to find
some of its input filters. Directory naming scheme:
OS name CPU type Name of directory for binaries
(uname -s) (hinv on IRIX)
--------------------------------------------------------------------------------
Linux all Linux
FreeBSD all FreeBSD
AIX RS1, PowerPC AIX_POWER
RS2 (390, 590) AIX_POWER2
IRIX R3000 IRIX_R3000
R4000 IRIX_R4000
R4400 IRIX_R4400
R4600 IRIX_R4600
R5000 IRIX_R5000
R8000 IRIX64_R8000
R10000 IRIX64_R10000
OSF1 all OSF1
HP-UX all HP-UX
SunOS all SunOS
In addition to the tgz files there is also a rpm file for RedHat Linux at
the same location where this file was found. The rpm file contains all
the files necessary to use Viewmol.
A directory with examples of all file formats Viewmol is able to read is
included. After installing the program you can change into any of the
directories under examples (e. g. examples/gaussian) and call viewmol
without parameters. You will get a file selection dialog where you can
select a file name (e. g. h2o.log) and after you click OK you should get
a molecule drawing if all is correct.
This file contains a list of all files belonging to the Viewmol program.
Further distribution of Viewmol is only permitted if all these files are
distributed.
Jörg-Rüdiger Hill (jrh@qc.ag-berlin.mpg.de)
List of files:
-rw-r--r-- 1 jrh users 17440 May 31 18:30 README
-rw-r--r-- 1 jrh users 29726 May 28 15:01 Xdefaults.english
-rw-r--r-- 1 jrh users 30965 May 28 15:01 Xdefaults.french
-rw-r--r-- 1 jrh users 30948 May 28 15:01 Xdefaults.german
-rw-r--r-- 1 jrh users 34487 May 28 15:01 Xdefaults.russian
drwxr-xr-x 2 jrh users 1024 May 28 15:01 babel
drwxr-xr-x 9 jrh users 1024 May 28 15:01 examples
drwxr-xr-x 5 jrh users 1024 May 31 18:13 kde
drwxr-xr-x 3 jrh users 1024 May 28 15:01 man
-rwxr-xr-x 1 jrh users 12562 May 28 15:01 readdmol
-rwxr-xr-x 1 jrh users 6892 May 28 15:01 readgulp
drwxr-xr-x 2 jrh users 2048 May 31 18:30 source
-rw-r--r-- 1 jrh users 6605 May 28 15:01 viewmolrc
-rwxr-xr-x 1 jrh users 2130 May 28 15:01 writecar
-rwxr-xr-x 1 jrh users 1996 May 28 15:01 writemol
-rwxr-xr-x 1 jrh users 1296 May 28 15:01 writetm
babel:
-rw-r--r-- 1 jrh users 5011 May 28 15:01 Makefile
-rw-r--r-- 1 jrh users 687 May 28 15:01 README
-rw-r--r-- 1 jrh users 31764 May 28 15:01 babel.h
-rw-r--r-- 1 jrh users 6449 May 28 15:01 bblmast.h
-rw-r--r-- 1 jrh users 8369 May 28 15:01 bbltyp.h
-rw-r--r-- 1 jrh users 2377 May 28 15:01 rdvm.c
-rw-r--r-- 1 jrh users 941 May 28 15:01 wrvm.c
examples:
drwxr-xr-x 2 jrh users 1024 May 28 15:01 discover
drwxr-xr-x 2 jrh users 1024 May 28 15:01 dmol
drwxr-xr-x 2 jrh users 1024 May 28 15:01 gaussian
drwxr-xr-x 2 jrh users 1024 May 28 15:01 gulp
drwxr-xr-x 2 jrh users 1024 May 28 15:01 mopac
drwxr-xr-x 2 jrh users 1024 May 28 15:01 pdb
drwxr-xr-x 2 jrh users 1024 May 28 15:01 turbomole
examples/discover:
-rw-r--r-- 1 jrh users 1322 May 28 15:01 benzene.cor
-rw-r--r-- 1 jrh users 32633 May 28 15:01 benzene.hessian
examples/dmol:
-rw-r--r-- 1 jrh users 128485 May 28 15:01 GaAs.outmol
examples/gaussian:
-rw-r--r-- 1 jrh users 54589 May 28 15:01 h2o.log
-rw-r--r-- 1 jrh users 61407 May 28 15:01 methanol.log
-rw-r--r-- 1 jrh users 107751 May 28 15:01 mmdc1.log
examples/gulp:
-rw-r--r-- 1 jrh users 88817 May 28 15:01 urea.out
examples/mopac:
-rw-r--r-- 1 jrh users 51788 May 28 15:01 adamantane.gpt
-rw-r--r-- 1 jrh users 236053 May 28 15:01 adamantane.out
examples/pdb:
-rw-r--r-- 1 jrh users 46851 May 28 15:01 fau1.pdb
-rw-r--r-- 1 jrh users 11778 May 28 15:01 gpc.pdb
-rw-r--r-- 1 jrh users 2374 May 28 15:01 octa.pdb
examples/turbomole:
-rw-r--r-- 1 jrh users 535 May 28 15:01 basis
-rw-r--r-- 1 jrh users 95363 May 28 15:01 control
-rw-r--r-- 1 jrh users 4501 May 28 15:01 coord
-rw-r--r-- 1 jrh users 28481 May 28 15:01 mo12
kde:
-rw-r--r-- 1 jrh users 247 May 28 15:01 README
drwxr-xr-x 3 jrh users 1024 May 28 15:01 applnk
drwxr-xr-x 2 jrh users 1024 May 28 15:01 icons
-rwxr-xr-x 1 jrh users 1577 May 31 18:13 install
drwxr-xr-x 3 jrh users 1024 May 31 18:20 mimelnk
kde/applnk:
drwxr-xr-x 2 jrh users 1024 May 28 15:01 Applications
kde/applnk/Applications:
-rw-r--r-- 1 jrh users 404 May 28 15:01 viewmol.kdelnk
kde/icons:
-rw-r--r-- 1 jrh users 1580 May 28 15:01 gulp.xpm
-rw-r--r-- 1 jrh users 1243 May 28 15:01 molecule.xpm
-rw-r--r-- 1 jrh users 1594 May 28 15:01 pdb.xpm
-rw-r--r-- 1 jrh users 7354 May 28 15:01 qc.xpm
-rw-r--r-- 1 jrh users 7269 May 28 15:01 viewmol.xpm
kde/mimelnk:
drwxr-xr-x 2 jrh users 1024 May 31 16:32 chemical
-rw-r--r-- 1 jrh users 1622 May 31 18:20 magic
kde/mimelnk/chemical:
-rw-r--r-- 1 jrh users 200 May 28 15:01 x-dmol.kdelnk
-rw-r--r-- 1 jrh users 201 May 28 15:01 x-gaussian-output.kdelnk
-rw-r--r-- 1 jrh users 184 May 28 15:01 x-gulp.kdelnk
-rw-r--r-- 1 jrh users 201 May 28 15:01 x-mopac.kdelnk
-rw-r--r-- 1 jrh users 193 May 28 15:01 x-msi-car.kdelnk
-rw-r--r-- 1 jrh users 162 May 28 15:01 x-msi-hessian.kdelnk
-rw-r--r-- 1 jrh users 165 May 28 15:01 x-msi-mdf.kdelnk
-rw-r--r-- 1 jrh users 160 May 28 15:01 x-msi-msi.kdelnk
-rw-r--r-- 1 jrh users 165 May 28 15:01 x-pdb.kdelnk
-rw-r--r-- 1 jrh users 171 May 28 15:01 x-turbomole-basis.kdelnk
-rw-r--r-- 1 jrh users 206 May 28 15:01 x-turbomole-control.kdelnk
-rw-r--r-- 1 jrh users 211 May 28 15:01 x-turbomole-coord.kdelnk
-rw-r--r-- 1 jrh users 170 May 28 15:01 x-turbomole-grad.kdelnk
-rw-r--r-- 1 jrh users 184 May 28 15:01 x-turbomole-scfmo.kdelnk
-rw-r--r-- 1 jrh users 191 May 28 15:01 x-turbomole-vibrational.kdelnk
man:
drwxr-xr-x 2 jrh users 2048 May 28 15:01 html
-rw-r--r-- 1 jrh users 1711 May 28 15:01 viewmol.html
-rw-r--r-- 1 jrh users 214895 May 28 15:01 viewmol.pdf
man/html:
-rw-r--r-- 1 jrh users 3823 May 28 15:01 bondform.gif
-rw-r--r-- 1 jrh users 2488 May 28 15:01 cellform.gif
-rw-r--r-- 1 jrh users 3922 May 28 15:01 coloreditor.gif
-rw-r--r-- 1 jrh users 4546 May 28 15:01 configurationform.gif
-rw-r--r-- 1 jrh users 5977 May 28 15:01 content.html
-rw-r--r-- 1 jrh users 78 May 28 15:01 cross_ref_motif.gif
-rw-r--r-- 1 jrh users 115 May 28 15:01 downarrow.gif
-rw-r--r-- 1 jrh users 2569 May 28 15:01 error.gif
-rw-r--r-- 1 jrh users 87 May 28 15:01 foot_motif.gif
-rw-r--r-- 1 jrh users 2509 May 28 15:01 footnode.html
-rw-r--r-- 1 jrh users 1996 May 28 15:01 historyform.gif
-rw-r--r-- 1 jrh users 1044 May 28 15:01 img12.gif
-rw-r--r-- 1 jrh users 112 May 28 15:01 leftarrow.gif
-rw-r--r-- 1 jrh users 5590 May 28 15:01 modesform.gif
-rw-r--r-- 1 jrh users 2458 May 28 15:01 moform.gif
-rw-r--r-- 1 jrh users 6568 May 28 15:01 mouse.gif
-rw-r--r-- 1 jrh users 835 May 28 15:01 newman.gif
-rw-r--r-- 1 jrh users 172 May 28 15:01 next_motif.gif
-rw-r--r-- 1 jrh users 991 May 28 15:01 node0.html
-rw-r--r-- 1 jrh users 3671 May 28 15:01 node1.html
-rw-r--r-- 1 jrh users 4421 May 28 15:01 node10.html
-rw-r--r-- 1 jrh users 5269 May 28 15:01 node11.html
-rw-r--r-- 1 jrh users 1983 May 28 15:01 node12.html
-rw-r--r-- 1 jrh users 2449 May 28 15:01 node13.html
-rw-r--r-- 1 jrh users 5775 May 28 15:01 node14.html
-rw-r--r-- 1 jrh users 4352 May 28 15:01 node15.html
-rw-r--r-- 1 jrh users 2768 May 28 15:01 node16.html
-rw-r--r-- 1 jrh users 3464 May 28 15:01 node17.html
-rw-r--r-- 1 jrh users 3092 May 28 15:01 node18.html
-rw-r--r-- 1 jrh users 16059 May 28 15:01 node19.html
-rw-r--r-- 1 jrh users 4160 May 28 15:01 node2.html
-rw-r--r-- 1 jrh users 10952 May 28 15:01 node20.html
-rw-r--r-- 1 jrh users 2832 May 28 15:01 node21.html
-rw-r--r-- 1 jrh users 2844 May 28 15:01 node22.html
-rw-r--r-- 1 jrh users 5037 May 28 15:01 node23.html
-rw-r--r-- 1 jrh users 4602 May 28 15:01 node24.html
-rw-r--r-- 1 jrh users 1548 May 28 15:01 node25.html
-rw-r--r-- 1 jrh users 1433 May 28 15:01 node26.html
-rw-r--r-- 1 jrh users 9875 May 28 15:01 node3.html
-rw-r--r-- 1 jrh users 5747 May 28 15:01 node4.html
-rw-r--r-- 1 jrh users 3834 May 28 15:01 node5.html
-rw-r--r-- 1 jrh users 1888 May 28 15:01 node6.html
-rw-r--r-- 1 jrh users 5581 May 28 15:01 node7.html
-rw-r--r-- 1 jrh users 25757 May 28 15:01 node8.html
-rw-r--r-- 1 jrh users 6818 May 28 15:01 node9.html
-rw-r--r-- 1 jrh users 220 May 28 15:01 previous_motif.gif
-rw-r--r-- 1 jrh users 4480 May 28 15:01 printform.gif
-rw-r--r-- 1 jrh users 13199 May 28 15:01 pseform.gif
-rw-r--r-- 1 jrh users 967 May 28 15:01 reddot.gif
-rw-r--r-- 1 jrh users 112 May 28 15:01 rightarrow.gif
-rw-r--r-- 1 jrh users 7959 May 28 15:01 spectrumform.gif
-rw-r--r-- 1 jrh users 145 May 28 15:01 up_motif.gif
-rw-r--r-- 1 jrh users 114 May 28 15:01 uparrow.gif
-rw-r--r-- 1 jrh users 344 May 28 15:01 viewmol.css
-rw-r--r-- 1 jrh users 31019 May 28 15:01 viewmol.gif
-rw-r--r-- 1 jrh users 4227 May 28 15:01 viewmol.html
-rw-r--r-- 1 jrh users 4560 May 28 15:01 waveform.gif
-rw-r--r-- 1 jrh users 967 May 28 15:01 yellowdot.gif
source:
-rw-r--r-- 1 jrh users 5281 May 28 15:01 GLwDrawAP.h
-rw-r--r-- 1 jrh users 8641 May 28 15:01 GLwMDrawA.h
-rw-r--r-- 1 jrh users 8504 May 28 15:29 Makefile
-rw-r--r-- 1 jrh users 9458 May 28 15:01 annotate.c
-rw-r--r-- 1 jrh users 5787 May 28 15:01 basisform.c
-rw-r--r-- 1 jrh users 3686 May 28 15:01 bio.c
-rw-r--r-- 1 jrh users 12997 May 28 15:01 bondform.c
-rw-r--r-- 1 jrh users 6909 May 28 15:01 bondorder.c
-rw-r--r-- 1 jrh users 15859 May 28 15:01 build.c
-rw-r--r-- 1 jrh users 14066 May 28 15:01 calcmo.c
-rw-r--r-- 1 jrh users 8178 May 28 15:01 cellform.c
-rw-r--r-- 1 jrh users 31830 May 28 15:01 coledit.c
-rw-r--r-- 1 jrh users 9798 May 28 15:01 confform.c
-rw-r--r-- 1 jrh users 3287 May 28 15:01 cylinder.c
-rw-r--r-- 1 jrh users 3393 May 28 15:01 device.c
-rw-r--r-- 1 jrh users 1162 May 28 15:01 dialog.h
-rw-r--r-- 1 jrh users 1845 May 28 15:01 distort.c
-rw-r--r-- 1 jrh users 42680 May 28 15:01 draw.c
-rw-r--r-- 1 jrh users 13832 May 28 15:01 drawel.c
-rw-r--r-- 1 jrh users 14028 May 28 15:01 drawform.c
-rw-r--r-- 1 jrh users 12281 May 28 15:01 drawop.c
-rw-r--r-- 1 jrh users 18188 May 28 15:01 drawsp.c
-rw-r--r-- 1 jrh users 2778 May 28 15:01 ellipse.c
-rw-r--r-- 1 jrh users 1078 May 28 15:01 eof.c
-rw-r--r-- 1 jrh users 32111 May 28 15:01 fallbacks.h
-rw-r--r-- 1 jrh users 25449 May 28 15:01 feedback.c
-rw-r--r-- 1 jrh users 7632 May 28 15:01 fileselect.c
-rwxr-xr-x 1 jrh users 10223 May 31 18:29 getmachine
-rw-r--r-- 1 jrh users 1644 May 28 15:01 getmem.c
-rw-r--r-- 1 jrh users 16539 May 28 15:01 getrc.c
-rw-r--r-- 1 jrh users 25414 May 28 15:01 glwdraw.c
-rw-r--r-- 1 jrh users 11557 May 28 15:01 hardcopy.c
-rw-r--r-- 1 jrh users 15515 May 28 15:01 hpgl.c
-rw-r--r-- 1 jrh users 10291 May 28 15:01 inert.c
-rw-r--r-- 1 jrh users 28383 May 28 15:01 init.c
-rw-r--r-- 1 jrh users 38461 May 28 15:01 input.c
-rw-r--r-- 1 jrh users 2606 May 28 15:01 insint.c
-rwxr-xr-x 1 jrh users 1465 May 31 17:01 install
-rw-r--r-- 1 jrh users 7129 May 28 15:01 intern.c
-rw-r--r-- 1 jrh users 12759 May 28 15:01 isotopes.h
-rw-r--r-- 1 jrh users 4272 May 28 15:01 makemenu.c
-rw-r--r-- 1 jrh users 1848 May 28 15:01 maketics.c
-rw-r--r-- 1 jrh users 2528 May 28 15:01 manual.c
-rw-r--r-- 1 jrh users 23012 May 28 15:01 marcub.c
-rw-r--r-- 1 jrh users 1104 May 28 15:01 marcub.h
-rw-r--r-- 1 jrh users 4650 May 28 15:01 matrix.c
-rw-r--r-- 1 jrh users 1545 May 28 15:01 menu.h
-rw-r--r-- 1 jrh users 9398 May 28 15:01 menudef.h
-rw-r--r-- 1 jrh users 6789 May 28 15:01 messgb.c
-rw-r--r-- 1 jrh users 10809 May 28 15:01 messgb.h
-rw-r--r-- 1 jrh users 13633 May 28 15:01 mkconn.c
-rw-r--r-- 1 jrh users 10326 May 28 15:01 mkunitc.c
-rw-r--r-- 1 jrh users 25497 May 28 15:01 mo.c
-rw-r--r-- 1 jrh users 13573 May 28 15:01 modifygeo.c
-rw-r--r-- 1 jrh users 6292 May 28 15:01 moform.c
-rw-r--r-- 1 jrh users 34773 May 28 15:01 mouseaction.c
-rw-r--r-- 1 jrh users 11560 May 28 15:01 mousecb.c
-rw-r--r-- 1 jrh users 2200 May 28 15:01 normod.c
-rw-r--r-- 1 jrh users 6015 May 28 15:01 optiform.c
-rw-r--r-- 1 jrh users 1688 May 28 15:01 osname.c
-rw-r--r-- 1 jrh users 12840 May 28 15:01 postscript.c
-rw-r--r-- 1 jrh users 23573 May 28 15:01 printform.c
-rw-r--r-- 1 jrh users 13562 May 28 15:01 pseform.c
-rw-r--r-- 1 jrh users 9145 May 28 15:01 ray.c
-rw-r--r-- 1 jrh users 3322 May 28 15:01 raytracer.c
-rw-r--r-- 1 jrh users 3082 May 28 15:01 readframe.c
-rw-r--r-- 1 jrh users 21564 May 28 15:01 readgauss.c
-rw-r--r-- 1 jrh users 9936 May 28 15:01 readmopac.c
-rw-r--r-- 1 jrh users 5301 May 28 15:01 readpdb.c
-rw-r--r-- 1 jrh users 2196 May 28 15:01 redraw.c
-rw-r--r-- 1 jrh users 2284 May 28 15:01 resource.c
-rw-r--r-- 1 jrh users 4111 May 28 15:01 runprog.c
-rw-r--r-- 1 jrh users 18049 May 28 15:01 save.c
-rw-r--r-- 1 jrh users 4640 May 28 15:01 saveform.c
-rw-r--r-- 1 jrh users 2186 May 28 15:01 scandir.c
-rw-r--r-- 1 jrh users 19066 May 28 15:01 specform.c
-rw-r--r-- 1 jrh users 2981 May 28 15:01 thermo.c
-rw-r--r-- 1 jrh users 13261 May 28 15:01 tm.c
-rw-r--r-- 1 jrh users 19644 May 28 15:01 viewmol.c
-rw-r--r-- 1 jrh users 10921 May 28 15:01 viewmol.h
-rw-r--r-- 1 jrh users 20063 May 28 15:01 waveform.c
-rw-r--r-- 1 jrh users 1427 May 28 15:01 window.c
-rw-r--r-- 1 jrh users 2520 May 28 15:01 xfont.c
-rw-r--r-- 1 jrh users 6528 May 28 15:01 zoom.c
|
