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cadzow: cadzow n_of_line n_of_iter apply the cadzow procedure to remove noise from the current FID. should be followed with an FT or an LP-SVD analysis
calib: interactive permits to assign chemical shift to a given point will change the offset
CALIBDI: CALIBDI distance_ref rate_ref Sets the reference distance to a reference relaxation rate. Used when computing interspin distances from nOe build-up measurements.
CCOLOR: ccolor n If n = 1 color plots (command CDISP2D) are displayed in color, if n = 0 color plots are displayed in B&W mode
CD: CD new_directory_path Changes the current working directory.
cdisp: obsolete, for compatibility
CDISP2D: CDISP2D 0/1 When CDISP2D is 1 the window displaying the contour plot of the 2D buffer is activated on the graphic screen in 2D.
CHECK3D: This command enters a interactive mode in which the user can choose the different parameters used for a 3D display. Only the cube is shown for speed convinience. DISP3D must have been previously set to 1.
CHEMS: Obsolete command, has been superseded by mkdbppm This command is an help for constructing chemical shift files to be used with the SIMUNOE command.
choose_scolor: to choose interactively the show color
CHSIZE: CHSIZE SI1 { SI2 { SI3 } } Change size of data, zero-fill or truncate. DO NOT change the value of OFFSET and SPECW, so EXTRACT should always be preferred on spectra (unless you know exactly what your are doing).
CLEAR: CLEAR 0/1 When set to 0, the 1D spectrum displayed by the current command, is put on the top of the currently displayed spectrum. Permits to add many spectrum images on the same display. When set to 1, the displat reacts in the standard fashion.
CLOSE: CLOSE file_name Closes the file that was previously OPENed.
CLOSEBUTTON: This command closes the current menu bar, and all the associated opened menu box. It is equivalent to closing it with the graphical close box.
COL: Extracts a 1D column (along dim 1) from the active 2D data-set, and displays it in the 1D window. The row will be available as a 1D data set when going from 2D to 1D
colint: interactive permits to choose columns interactively on a 2D by clicking on the data-set
COLOR: COLOR index window Defines the current color used for display. The chosen color remains until the next COLOR command. index is : 1:white 2:red 3:yellow 4:green 5:cian 6:blue 7:purple 8:black Window is : 1:1D 2:disp 3:contour 4:3D
CONCAT: CONCAT file_name Appends the content of file_name to the current data-set in memory. Work with 'H' files
CONFIG: Output to the terminal the actual configuration of the system dependent parameters : -Licence being used -Version number -Sizes of the different static buffers -Operating System (VMS or UNIX) -Graphic manager (X_Windows or VWS) -Plotter driver (HP-GL or Postscript)
conjg: set up for Conjugated Gradient algorithm for MAXENT
CONJG: Reset to default value for conjugate gradient algorithm for Maximum Entropy run.
CONNECT: CONNECT file_name The journaling of all the actions, performed by GIFA is directed to the file_name. Journaling is resumed to the standard gifa.log files with DISCONNECT.
cont: obsolete, for compatibility
CONTEXTS: List of the internal GIFA variables (contexts): $_ value of the next parameter present on the calling line. CANNOT BE USED WITHIN EVALUATED EXPRESSIONS. if the following command is used : @test 3 test.001 within the file test, $_ will be 3 the first time and test.001 the second time. If no value is present on the calling line, the user will be prompted for the value $ABSMAX current value of ABSMAX $ARG True (1) if arguments are present on the calling line (within macro only) $BUTTON 1,2 or 3 depending on which mouse button was last clicked $CALIBDI[1] the current calibrating distance, as defined with the CALIBDI command $CALIBDI[2] the current calibrating relaxation rate, as defined with the CALIBDI command $CDISP2D current value of command CDISP2D $CHI2 value of the chi2 returned by the last command : GO, LINEFIT, === RT->PK $COL index of the last extracted column in 2D $COLOR current value for COLOR $CONFIG_OS The system type, as returned by the CONFIG command $CONFIG_PLOT The plot driver, as returned by the CONFIG command $CONFIG_WIN The window manager, as returned by the CONFIG command $CX current value for CX $CY current value for CY $CZ current value for CZ $C_ABSMAX value of ABSMAX of the currently JOINed dataset $C_DIM value of DIM of the currently JOINed dataset $C_FREQ value of FREQ of the currently JOINed dataset $C_FREQ1 value of FREQ_1D of the currently JOINed dataset $C_FREQ2 value of FREQ_2D of the currently JOINed dataset $C_FREQ3 value of FREQ_3D of the currently JOINed dataset $C_JOINED is if there is a currently JOINed dataset, 0 otherwise $C_OFFSF1 value of OFFSET_1 of the currently JOINed dataset $C_OFFSF2 value of OFFSET_2 of the currently JOINed dataset $C_OFFSF3 value of OFFSET_3 of the currently JOINed dataset $C_SIZEF1 value of SI1 of the currently JOINed dataset $C_SIZEF2 value of SI2 of the currently JOINed dataset $C_SIZEF3 value of SI3 of the currently JOINed dataset $C_SPECWF1 value of SPECW_1 of the currently JOINed dataset $C_SPECWF2 value of SPECW_2 of the currently JOINed dataset $C_SPECWF3 value of SPECW_3 of the currently JOINed dataset $C_TYPE value of ITYPE of the currently JOINed dataset $DIM current value of DIM $DISP1D current value of command DISP1D $DISP2D current value of command DISP2D $DISP3D current value of command DISP3D $DIST the result of the last DIST command $FREQ main frequency (1H) of the spectrometer $FREQ_1D frequency in 1D $FREQ_1_2D frequency in 2D in F1 $FREQ_1_2D frequency in 3D in F1 $FREQ_2_2D frequency in 2D in F2 $FREQ_2_2D frequency in 3D in F2 $FREQ_3_2D frequency in 3D in F3 $GB1 value of gb in F1 $GB2 value of gb in F2 $GB3 value of gb in F3 $ITYPE_1D value of itype in 1D $ITYPE_2D value of itype in 2D $ITYPE_3D value of itype in 1D $LB1 value of lb in F1 $LB2 value of lb in F2 $LB3 value of lb in F3 $LEVEL current value of command LEVEL $LICENCE The licence as returned by the CONFIG command $LOGA current value of command LOGA $MAX[1] value of last computed max computed with the command MAX $MAX[2] value of last computed min computed with the command MAX $MEM_MAX The larger data set available, as returned by the CONFIG command $MEM_PRO_1D The size of the protected 1D area, as returned by the CONFIG command $MEM_PRO_2D The size of the protected 2D area, as returned by the CONFIG command $MEM_PRO_3D The size of the protected 3D area, as returned by the CONFIG command $NAME name of the current data-set $NAR number of A.R. coefficients as listed by ARLIST $NOISE value of the noise, as given by the NOISE command $NPK1D The number of entries in the 1D peak table $NPK2D The number of entries in the 2D peak table $NPK3D The number of entries in the 3D peak table $NPOINT The number of entries in the POINTX,Y buffer $NRT Number of root as listed by RTLIST $NSVD Number of root as listed by SVDLIST $OFFSET_1D spectral offset in 1D $OFFSET_1_2D spectral offset in 2D in F1 $OFFSET_1_3D spectral offset in 3D in F1 $OFFSET_2_2D spectral offset in 2D in F2 $OFFSET_2_3D spectral offset in 3D in F2 $OFFSET_3_3D spectral offset in 3D in F3 $ORDER current value for ORDER $PH0 0th order of the last phase correction $PH1 1st order of the last phase correction $PK1D_A[i] amplitude of the ith entry in the 1D peak table $PK1D_F[i] frequency of the ith entry in the 1D peak table $PK1D_P[i] phase of the ith entry in the 1D peak table $PK1D_W[i] width of the ith entry in the 1D peak table $PK2D_A[i] amplitude of the ith entry in the 2D peak table $PK2D_F1F[i] F1 frequency of the ith entry in the 2D peak table $PK2D_F1W[i] F1 width of the ith entry in the 2D peak table $PK2D_F2F[i] F2 frequency of the ith entry in the 2D peak table $PK2D_F2W[i] F2 width of the ith entry in the 2D peak table $PK3D_A[i] amplitude of the ith entry in the 3D peak table $PK3D_F1F[i] F1 frequency of the ith entry in the 3D peak table $PK3D_F1W[i] F1 width of the ith entry in the 3D peak table $PK3D_F2F[i] F2 frequency of the ith entry in the 3D peak table $PK3D_F2W[i] F2 width of the ith entry in the 3D peak table $PK3D_F3F[i] F3 frequency of the ith entry in the 3D peak table $PK3D_F3W[i] F3 width of the ith entry in the 3D peak table $PLANE[1] axis of the last extracted plane in 3D $PLANE[2] index of the last extracted plane in 3D $PLOTAXIS[1] current value for the unit used in PLOTAXIS $PLOTAXIS[2] current value for the tick distance in x axis $PLOTAXIS[3] current value for the tick distance in y axis $PLOTOFFSET[1] current value for plot offset on X axis $PLOTOFFSET[2] current value for plot offset on Y axis $POINTX[i] X coordinates of ith clicked point (with POINT or MULTIPOINT or MONOPOINT $POINTY[i] Y coordinates of ith clicked point (with POINT or MULTIPOINT or MONOPOINT coordinates are in index unit, absolute on the spectrum. $POINTY[1] after a MONOPOINT in 1D, ranges between 0 and 1 depending of the position in the 1D window. $RANDOM a random variable in the range 0..1 with equiprobable distribution $RANDOMG a random variable with normal law, unit variance and zero mean $RANDOMZ same as $RANDOM but resets the random series $RELAX the result of the last RELAXRATE or SLOPE commands $RCRYST the result of the last RCRYST command CALIBDI $ROW index of the last extracted row in 2D $SCALE current value of the context SCALE $SCOLOR current value of the context SCOLOR $SHIFT value of the offset, as given by the SHIFT command $SI1_1D size of the 1D buffer. $SI1_2D size in F1 of the 2D buffer $SI1_3D size in F1 of the 3D buffer $SI2_2D size in F2 of the 2D buffer $SI2_3D size in F2 of the 3D buffer $SI3_3D size in F3 of the 3D buffer $SIGN current value of command SIGN $SOMREC value returned by the last SOMREC command $SPECW_1D spectral width in 1D $SPECW_1_2D spectral width in 2D in F1 $SPECW_1_2D spectral width in 3D in F1 $SPECW_2_2D spectral width in 2D in F2 $SPECW_2_3D spectral width in 3D in F2 $SPECW_3_3D spectral width in 3D in F3 $UNIT current value for UNIT $VAR_MAX The total number of user variable available, as returned by the CONFIG command $VERSION The current version, as returned by the CONFIG command $VHEIGHT current value of command VHEIGHT $ZOOM 1 if in ZOOM mode $ZOOM_1D[1] left coordinate of the 1D zoom window $ZOOM_1D[2] right coordinate of the 1D zoom window $ZOOM_2D[1] lower F1 coordinate of the 2D zoom window $ZOOM_2D[2] left F2 coordinate of the 2D zoom window $ZOOM_2D[3] upper F1 coordinate of the 2D zoom window $ZOOM_2D[4] right F2 coordinate of the 2D zoom window $ZOOM_3D[1] "left" F1 coordinate of the 3D zoom window $ZOOM_3D[2] "right" F1 coordinate of the 3D zoom window $ZOOM_3D[3] "left" F2 coordinate of the 3D zoom window $ZOOM_3D[4] "right" F2 coordinate of the 3D zoom window $ZOOM_3D[5] "left" F3 coordinate of the 3D zoom window $ZOOM_3D[6] "right" F3 coordinate of the 3D zoom window
CONTROLS: Control structures are available in the macros file : GOTO - one line IF - multiple line IF - FOR loop - WHILE loop macros can be called from within macros, up to 9 levels of nesting. No recursivity is allowed.
correct1st: no parameter corrects for the 1st point by dividing it by 2
CX: CX x Size in centimeters in the x-axis used for the graphic windows and for the plot. Used by PLOT and STPL
CY: CY y Size in centimeters of the y-axis used for the graphic windows and for the plot. Used by PLOT and STPL.
CZ: CZ z Size in centimeters of the z-axis used for 3D display.

Back to Alphabetical List

cadzow

calib

CALIBDI

CCOLOR

CD

cdisp

CDISP2D

CHECK3D

CHEMS

choose_scolor

CHSIZE

CLEAR

CLOSE

CLOSEBUTTON

COL

colint

COLOR

CONCAT

CONFIG

conjg

CONJG

CONNECT

cont

CONTEXTS

CONTROLS

correct1st

CX

CY

CZ