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347 766 165 (*BSD\), ) 173 SB
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1558 884 236 (accelerated ) 240 SB
1798 884 142 (shared ) 146 SB
1944 884 162 (memory) 162 SB
255 943 317 (communication ) 326 SB
581 943 88 (\(via ) 97 SB
678 943 74 (the ) 83 SB
761 943 155 (XInput ) 164 SB
925 943 84 (and ) 93 SB
1018 943 230 (MIT-SHM ) 239 SB
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1503 943 40 (if ) 50 SB
1553 943 185 (available ) 195 SB
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1821 943 74 (the ) 84 SB
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1589 1238 188 (Alchemy ) 193 SB
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1397 1297 158 (format, ) 170 SB
1567 1297 221 (Minnesota ) 233 SB
1800 1297 306 (Supercomputer) 306 SB
255 1356 834 (Centre's \(MSC\) XYZ \(XMol\) format and ) 835 SB
1090 1356 231 (CHARMm ) 232 SB
1322 1356 145 (format ) 146 SB
1468 1356 106 (files. ) 107 SB
1575 1356 45 (If ) 46 SB
1621 1356 254 (connectivity ) 255 SB
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313 1474 213 (wireframe ) 217 SB
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678 1474 170 (cylinder ) 174 SB
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1316 1474 270 (alpha-carbon ) 274 SB
1590 1474 124 (trace, ) 129 SB
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255 1533 174 (spheres, ) 180 SB
435 1533 332 (macromolecular ) 338 SB
773 1533 159 (ribbons ) 165 SB
938 1533 13 ( ) 19 SB
957 1533 142 (\(either ) 148 SB
1105 1533 160 (smooth ) 166 SB
1271 1533 150 (shaded ) 157 SB
1428 1533 107 (solid ) 114 SB
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1708 1533 56 (or ) 63 SB
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639 1592 84 (and ) 90 SB
729 1592 79 (dot ) 85 SB
814 1592 155 (surface ) 161 SB
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255 1651 243 (represented ) 248 SB
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1551 1710 168 (rotated, ) 173 SB
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345 1769 195 (z-clipped ) 201 SB
546 1769 195 (\(slabbed\) ) 201 SB
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255 1828 83 (line ) 84 SB
339 1828 56 (or ) 57 SB
396 1828 59 (an ) 60 SB
456 1828 180 (attached ) 181 SB
637 1828 84 (dial ) 85 SB
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993 1828 81 (can ) 82 SB
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1175 1828 35 (a ) 36 SB
1211 1828 188 (prepared ) 190 SB
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335 1887 71 (via ) 78 SB
413 1887 270 (inter-process ) 277 SB
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1032 1887 54 (to ) 62 SB
1094 1887 121 (allow ) 129 SB
1223 1887 35 (a ) 43 SB
1266 1887 120 (given ) 128 SB
1394 1887 131 (image ) 139 SB
1533 1887 56 (or ) 64 SB
1597 1887 209 (viewpoint ) 217 SB
1814 1887 54 (to ) 62 SB
1876 1887 59 (be ) 67 SB
1943 1887 163 (restored) 163 SB
255 1946 170 (quickly. ) 171 SB
426 1946 169 (RasMol ) 170 SB
596 1946 81 (can ) 82 SB
678 1946 92 (also ) 93 SB
771 1946 133 (create ) 134 SB
905 1946 35 (a ) 36 SB
941 1946 123 (script ) 124 SB
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1140 1946 219 (containing ) 220 SB
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1662 1946 178 (required ) 180 SB
1842 1946 54 (to ) 56 SB
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335 2005 155 (current ) 162 SB
497 2005 144 (image. ) 151 SB
648 2005 158 (Finally, ) 165 SB
813 2005 74 (the ) 81 SB
894 2005 187 (rendered ) 194 SB
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1226 2005 95 (may ) 102 SB
1328 2005 59 (be ) 66 SB
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584 2064 125 (raster ) 130 SB
714 2064 56 (or ) 61 SB
775 2064 139 (vector ) 144 SB
919 2064 233 (PostScript, ) 238 SB
1157 2064 106 (GIF, ) 111 SB
1268 2064 126 (PPM, ) 131 SB
1399 2064 131 (BMP, ) 136 SB
1535 2064 135 (PICT, ) 140 SB
1675 2064 90 (Sun ) 95 SB
1770 2064 186 (rasterfile ) 192 SB
1962 2064 56 (or ) 62 SB
2024 2064 54 (as ) 60 SB
2084 2064 22 (a) 22 SB
255 2123 719 (MolScript input script or Kinemage.) 719 SB
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1518 2241 295 (Biocomputing ) 301 SB
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342 2300 74 (the ) 77 SB
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1507 2300 84 (and ) 87 SB
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255 2359 97 (U.K.) 97 SB
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832 2536 213 (questions, ) 219 SB
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1301 2536 56 (or ) 62 SB
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555 2951 456 (Middlesex   UB6 0HE.) 456 SB
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1 #C
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1913 1295 64 (bit ) 65 SB
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1960 1354 84 (and ) 85 SB
2045 1354 61 (the) 61 SB
255 1413 187 (rendered ) 193 SB
448 1413 163 (images. ) 170 SB
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1 #C
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1 #C
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EJ RS
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1275 2123 144 (x-axis, ) 148 SB
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684 2241 74 (the ) 76 SB
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1029 2241 121 (scroll ) 123 SB
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1443 2300 74 (the ) 78 SB
1521 2300 141 (dotted ) 145 SB
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310 2359 167 (indicate ) 168 SB
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514 2359 126 (direct ) 127 SB
641 2359 170 (rotation ) 171 SB
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972 2359 54 (to ) 55 SB
1027 2359 74 (the ) 76 SB
1103 2359 155 (current ) 157 SB
1260 2359 166 (indictor ) 168 SB
1428 2359 185 (position; ) 187 SB
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954 2418 54 (of ) 65 SB
1019 2418 74 (the ) 85 SB
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1237 2418 76 (bar ) 88 SB
1325 2418 54 (to ) 66 SB
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1533 2418 74 (the ) 86 SB
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694 2477 74 (the ) 81 SB
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1121 2477 151 (second ) 158 SB
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1326 2536 54 (to ) 59 SB
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451 2595 60 (by ) 64 SB
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593 2595 188 (indicator ) 192 SB
785 2595 198 (travelling ) 202 SB
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1065 2595 135 (length ) 139 SB
1204 2595 54 (of ) 58 SB
1262 2595 74 (the ) 78 SB
1340 2595 121 (scroll ) 125 SB
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375 3018 153 (objects ) 160 SB
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1 #C
statusdict begin /manualfeed false store end
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1583 224 74 (the ) 78 SB
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1886 224 74 (the ) 79 SB
1965 224 141 (nearest) 141 SB
255 283 553 (atom to the point identified.) 553 SB
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351 401 182 (program ) 188 SB
539 401 85 (will ) 92 SB
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858 401 74 (the ) 81 SB
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1120 401 185 (window, ) 192 SB
1312 401 74 (the ) 81 SB
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1540 401 111 (type, ) 118 SB
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1782 401 175 (number, ) 182 SB
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255 460 118 (name ) 121 SB
376 460 84 (and ) 87 SB
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621 460 175 (number. ) 178 SB
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847 460 74 (the ) 78 SB
925 460 113 (atom ) 117 SB
1042 460 44 (is ) 48 SB
1090 460 35 (a ) 39 SB
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1675 867 35 (a ) 37 SB
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1577 926 195 (describes ) 196 SB
1773 926 74 (the ) 75 SB
1848 926 157 (oxygen ) 158 SB
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1229 985 54 (of ) 66 SB
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539 1162 84 (and ) 92 SB
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346 2116 170 (rotation ) 171 SB
517 2116 125 (about ) 126 SB
643 2116 74 (the ) 75 SB
718 2116 49 (X ) 50 SB
768 2116 84 (and ) 85 SB
853 2116 49 (Y ) 50 SB
903 2116 100 (axes ) 101 SB
1004 2116 278 (automatically ) 280 SB
1284 2116 166 (updates ) 168 SB
1452 2116 74 (the ) 76 SB
1528 2116 207 (indicators ) 209 SB
1737 2116 63 (on ) 65 SB
1802 2116 74 (the ) 76 SB
1878 2116 228 (appropriate) 228 SB
255 2175 121 (scroll ) 124 SB
379 2175 108 (bars. ) 111 SB
490 2175 72 (All ) 75 SB
565 2175 74 (the ) 77 SB
642 2175 170 (rotation ) 174 SB
816 2175 103 (dials ) 107 SB
923 2175 130 (rotate ) 134 SB
1057 2175 74 (the ) 78 SB
1135 2175 191 (molecule ) 195 SB
1330 2175 88 (180 ) 92 SB
1422 2175 165 (degrees ) 169 SB
1591 2175 71 (for ) 75 SB
1666 2175 35 (a ) 39 SB
1705 2175 194 (complete ) 198 SB
1903 2175 203 (revolution) 203 SB
255 2234 54 (of ) 61 SB
316 2234 74 (the ) 81 SB
397 2234 97 (dial. ) 104 SB
501 2234 72 (All ) 79 SB
580 2234 74 (the ) 81 SB
661 2234 208 (remaining ) 215 SB
876 2234 103 (dials ) 110 SB
986 2234 131 (clamp ) 138 SB
1124 2234 103 (their ) 110 SB
1234 2234 137 (values ) 144 SB
1378 2234 54 (to ) 61 SB
1439 2234 234 (permissible ) 241 SB
1680 2234 155 (ranges; ) 162 SB
1842 2234 155 (turning ) 162 SB
2004 2234 102 (these) 102 SB
255 2293 103 (dials ) 107 SB
362 2293 94 (past ) 98 SB
460 2293 103 (their ) 107 SB
567 2293 120 (limits ) 124 SB
691 2293 78 (has ) 82 SB
773 2293 63 (no ) 67 SB
840 2293 137 (effect. ) 141 SB
981 2293 90 (The ) 94 SB
1075 2293 135 (centre ) 139 SB
1214 2293 54 (of ) 58 SB
1272 2293 170 (rotation ) 174 SB
1446 2293 54 (of ) 58 SB
1504 2293 74 (the ) 78 SB
1582 2293 191 (molecule ) 196 SB
1778 2293 95 (may ) 100 SB
1878 2293 59 (be ) 64 SB
1942 2293 164 (changed) 164 SB
255 2352 975 (using the 'centre' command on the command line.) 975 SB
255 2470 1678 (The "ZOOM" dial allows the interactive zooming of the molecule between 10% and ) 1679 SB
1934 2470 130 (200% ) 131 SB
2065 2470 41 (of) 41 SB
255 2529 74 (the ) 81 SB
336 2529 163 (original ) 170 SB
506 2529 149 (default ) 156 SB
662 2529 294 (magnification. ) 301 SB
963 2529 185 (Rotating ) 192 SB
1155 2529 74 (the ) 81 SB
1236 2529 84 (dial ) 92 SB
1328 2529 209 (clockwise ) 217 SB
1545 2529 201 (magnifies ) 209 SB
1754 2529 74 (the ) 82 SB
1836 2529 191 (molecule ) 199 SB
2035 2529 71 (and) 71 SB
255 2588 282 (anticlockwise ) 284 SB
539 2588 153 (shrinks ) 155 SB
694 2588 53 (it. ) 55 SB
749 2588 48 (A ) 50 SB
799 2588 194 (complete ) 196 SB
995 2588 216 (revolution ) 218 SB
1213 2588 54 (of ) 56 SB
1269 2588 74 (the ) 76 SB
1345 2588 84 (dial ) 86 SB
1431 2588 255 (corresponds ) 257 SB
1688 2588 54 (to ) 56 SB
1744 2588 35 (a ) 38 SB
1782 2588 130 (100% ) 133 SB
1915 2588 152 (change ) 155 SB
2070 2588 36 (in) 36 SB
255 2647 110 (scale.) 110 SB
255 2765 90 (The ) 92 SB
347 2765 179 ("SLAB" ) 181 SB
528 2765 97 (dial, ) 99 SB
627 2765 131 (which ) 134 SB
761 2765 44 (is ) 47 SB
808 2765 98 (only ) 101 SB
909 2765 182 (effective ) 185 SB
1094 2765 119 (when ) 122 SB
1216 2765 175 (slabbing ) 178 SB
1394 2765 44 (is ) 47 SB
1441 2765 177 (enabled, ) 180 SB
1621 2765 140 (allows ) 143 SB
1764 2765 74 (the ) 77 SB
1841 2765 96 (user ) 99 SB
1940 2765 54 (to ) 57 SB
1997 2765 109 (move) 109 SB
255 2824 74 (the ) 75 SB
330 2824 110 (front ) 111 SB
441 2824 209 (z-clipping ) 210 SB
651 2824 118 (plane ) 119 SB
770 2824 108 (from ) 110 SB
880 2824 74 (the ) 76 SB
956 2824 154 (nearest ) 156 SB
1112 2824 115 (point ) 117 SB
1229 2824 63 (on ) 65 SB
1294 2824 74 (the ) 76 SB
1370 2824 191 (molecule ) 193 SB
1563 2824 54 (to ) 56 SB
1619 2824 74 (the ) 76 SB
1695 2824 178 (furthest. ) 180 SB
1875 2824 48 (A ) 50 SB
1925 2824 181 (complete) 181 SB
255 2883 170 (rotation ) 183 SB
438 2883 54 (of ) 67 SB
505 2883 74 (the ) 87 SB
592 2883 139 (SLAB ) 152 SB
744 2883 84 (dial ) 97 SB
841 2883 255 (corresponds ) 269 SB
1110 2883 54 (to ) 68 SB
1178 2883 161 (moving ) 175 SB
1353 2883 74 (the ) 88 SB
1441 2883 170 (clipping ) 184 SB
1625 2883 118 (plane ) 132 SB
1757 2883 86 (half ) 100 SB
1857 2883 74 (the ) 88 SB
1945 2883 161 (distance) 161 SB
255 2942 178 (between ) 182 SB
437 2942 74 (the ) 78 SB
515 2942 110 (front ) 114 SB
629 2942 84 (and ) 88 SB
717 2942 106 (back ) 110 SB
827 2942 54 (of ) 58 SB
885 2942 74 (the ) 78 SB
963 2942 204 (molecule. ) 208 SB
1171 2942 171 (Turning ) 175 SB
1346 2942 74 (the ) 78 SB
1424 2942 139 (SLAB ) 144 SB
1568 2942 112 (knob ) 117 SB
1685 2942 209 (clockwise ) 214 SB
1899 2942 141 (moves ) 146 SB
2045 2942 61 (the) 61 SB
255 3001 170 (clipping ) 172 SB
427 3001 118 (plane ) 120 SB
547 3001 131 (closer ) 133 SB
680 3001 54 (to ) 56 SB
736 3001 74 (the ) 76 SB
812 3001 146 (viewer ) 148 SB
960 3001 229 (\(increasing ) 231 SB
1191 3001 74 (the ) 77 SB
1268 3001 162 (number ) 165 SB
1433 3001 54 (of ) 57 SB
1490 3001 153 (objects ) 156 SB
1646 3001 228 (displayed\), ) 231 SB
1877 3001 84 (and ) 87 SB
1964 3001 142 (turning) 142 SB
255 3060 40 (it ) 52 SB
307 3060 282 (anticlockwise ) 294 SB
601 3060 141 (moves ) 153 SB
754 3060 40 (it ) 52 SB
806 3060 148 (further ) 160 SB
966 3060 116 (away ) 128 SB
1094 3060 240 (\(preventing ) 252 SB
1346 3060 115 (more ) 127 SB
1473 3060 153 (objects ) 165 SB
1638 3060 108 (from ) 120 SB
1758 3060 120 (being ) 133 SB
1891 3060 215 (displayed\).) 215 SB
1 #C
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255 224 184 (Slabbing ) 186 SB
441 224 123 (mode ) 126 SB
567 224 44 (is ) 47 SB
614 224 164 (enabled ) 167 SB
781 224 60 (by ) 63 SB
844 224 137 (typing ) 140 SB
984 224 74 (the ) 77 SB
1061 224 206 (command ) 209 SB
1270 224 98 ('slab ) 101 SB
1371 224 71 (on' ) 74 SB
1445 224 63 (on ) 66 SB
1511 224 74 (the ) 77 SB
1588 224 206 (command ) 209 SB
1797 224 83 (line ) 86 SB
1883 224 56 (or ) 59 SB
1942 224 164 (toggling) 164 SB
255 283 723 (the slab option on the options menu.) 723 SB
255 401 90 (The ) 91 SB
346 401 221 (translation ) 222 SB
568 401 122 (along ) 123 SB
691 401 74 (the ) 75 SB
766 401 49 (X ) 50 SB
816 401 84 (and ) 85 SB
901 401 49 (Y ) 50 SB
951 401 90 (axis ) 91 SB
1042 401 140 (allows ) 141 SB
1183 401 74 (the ) 75 SB
1258 401 135 (centre ) 136 SB
1394 401 54 (of ) 55 SB
1449 401 74 (the ) 75 SB
1524 401 191 (molecule ) 193 SB
1717 401 54 (to ) 56 SB
1773 401 59 (be ) 61 SB
1834 401 147 (moved ) 149 SB
1983 401 123 (within) 123 SB
255 460 74 (the ) 75 SB
330 460 146 (canvas ) 147 SB
477 460 96 (area ) 97 SB
574 460 54 (of ) 55 SB
629 460 74 (the ) 75 SB
704 460 152 (screen. ) 153 SB
857 460 186 (Rotation ) 187 SB
1044 460 84 (and ) 85 SB
1129 460 185 (zooming ) 186 SB
1315 460 74 (are ) 75 SB
1390 460 83 (still ) 84 SB
1474 460 219 (performed ) 220 SB
1694 460 159 (relative ) 160 SB
1854 460 54 (to ) 55 SB
1909 460 74 (the ) 75 SB
1984 460 122 (centre) 122 SB
255 519 1312 (of rotation and the molecule respectively, which may often not be ) 1313 SB
1568 519 50 (at ) 51 SB
1619 519 74 (the ) 75 SB
1694 519 135 (centre ) 136 SB
1830 519 54 (of ) 55 SB
1885 519 74 (the ) 75 SB
1960 519 146 (canvas.) 146 SB
255 578 848 (The TRANS Z dial currently has no effect.) 848 SB
32 0 0 67 67 1 0 0 61 /Times-Bold /font29 ANSIFont font
255 756 725 (Command Line Interface) 725 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
255 884 169 (RasMol ) 175 SB
430 884 140 (allows ) 146 SB
576 884 74 (the ) 80 SB
656 884 205 (execution ) 211 SB
867 884 54 (of ) 60 SB
927 884 220 (interactive ) 226 SB
1153 884 225 (commands ) 231 SB
1384 884 123 (typed ) 129 SB
1513 884 50 (at ) 56 SB
1569 884 74 (the ) 80 SB
1649 884 169 (RasMol ) 175 SB
1824 884 158 (prompt ) 165 SB
1989 884 49 (in ) 56 SB
2045 884 61 (the) 61 SB
255 943 174 (terminal ) 187 SB
442 943 185 (window. ) 198 SB
640 943 226 (Characters ) 240 SB
880 943 123 (typed ) 137 SB
1017 943 90 (into ) 104 SB
1121 943 125 (either ) 139 SB
1260 943 74 (the ) 88 SB
1348 943 174 (terminal ) 188 SB
1536 943 56 (or ) 70 SB
1606 943 74 (the ) 88 SB
1694 943 151 (display ) 165 SB
1859 943 172 (window ) 186 SB
2045 943 61 (are) 61 SB
255 1002 210 (processed ) 211 SB
466 1002 63 (on ) 65 SB
531 1002 74 (the ) 76 SB
607 1002 206 (command ) 208 SB
815 1002 96 (line. ) 98 SB
913 1002 112 (Each ) 114 SB
1027 1002 206 (command ) 208 SB
1235 1002 109 (must ) 111 SB
1346 1002 59 (be ) 61 SB
1407 1002 120 (given ) 122 SB
1529 1002 63 (on ) 65 SB
1594 1002 35 (a ) 37 SB
1631 1002 177 (separate ) 179 SB
1810 1002 83 (line ) 85 SB
1895 1002 211 (terminated) 211 SB
255 1061 60 (by ) 62 SB
317 1061 35 (a ) 37 SB
354 1061 165 (newline ) 167 SB
521 1061 56 (or ) 58 SB
579 1061 172 (carriage ) 174 SB
753 1061 133 (return ) 135 SB
888 1061 209 (character. ) 211 SB
1099 1061 216 (Keywords ) 218 SB
1317 1061 74 (are ) 76 SB
1393 1061 98 (case ) 100 SB
1493 1061 218 (insensitive ) 220 SB
1713 1061 84 (and ) 86 SB
1799 1061 95 (may ) 98 SB
1897 1061 59 (be ) 62 SB
1959 1061 147 (entered) 147 SB
255 1120 49 (in ) 50 SB
305 1120 102 (both ) 103 SB
408 1120 126 (lower ) 127 SB
535 1120 84 (and ) 85 SB
620 1120 127 (upper ) 128 SB
748 1120 98 (case ) 99 SB
847 1120 148 (letters. ) 149 SB
996 1120 72 (All ) 73 SB
1069 1120 232 (whitespace ) 233 SB
1302 1120 153 (\(space, ) 154 SB
1456 1120 74 (tab ) 75 SB
1531 1120 84 (and ) 86 SB
1617 1120 209 (formfeed\) ) 211 SB
1828 1120 215 (characters ) 217 SB
2045 1120 61 (are) 61 SB
255 1179 1851 (ignored, except to separate the keyword and the arguments of a command. Blank lines \(those) 1851 SB
255 1238 219 (containing ) 222 SB
477 1238 98 (only ) 101 SB
578 1238 249 (whitespace\) ) 252 SB
830 1238 74 (are ) 77 SB
907 1238 177 (ignored. ) 180 SB
1087 1238 129 (There ) 133 SB
1220 1238 44 (is ) 48 SB
1268 1238 59 (an ) 63 SB
1331 1238 161 (internal ) 165 SB
1496 1238 214 (restriction ) 218 SB
1714 1238 89 (that ) 93 SB
1807 1238 206 (command ) 210 SB
2017 1238 89 (lines) 89 SB
255 1297 74 (are ) 76 SB
331 1297 148 (limited ) 150 SB
481 1297 54 (to ) 56 SB
537 1297 35 (a ) 37 SB
574 1297 207 (maximum ) 209 SB
783 1297 54 (of ) 56 SB
839 1297 88 (256 ) 90 SB
929 1297 228 (characters. ) 230 SB
1159 1297 153 (Strings ) 156 SB
1315 1297 95 (may ) 98 SB
1413 1297 59 (be ) 62 SB
1475 1297 195 (delimited ) 198 SB
1673 1297 60 (by ) 63 SB
1736 1297 194 (matching ) 197 SB
1933 1297 127 (single ) 130 SB
2063 1297 43 (or) 43 SB
255 1356 147 (double ) 149 SB
404 1356 203 (quotation ) 205 SB
609 1356 146 (marks. ) 148 SB
757 1356 158 (Placing ) 160 SB
917 1356 35 (a ) 37 SB
954 1356 102 (hash ) 104 SB
1058 1356 54 ('#' ) 56 SB
1114 1356 196 (character ) 198 SB
1312 1356 203 (anywhere ) 205 SB
1517 1356 157 (outside ) 159 SB
1676 1356 145 (quotes ) 148 SB
1824 1356 218 (terminates ) 221 SB
2045 1356 61 (the) 61 SB
255 1415 96 (line. ) 109 SB
364 1415 169 (RasMol ) 182 SB
546 1415 85 (will ) 98 SB
644 1415 139 (ignore ) 152 SB
796 1415 74 (the ) 87 SB
883 1415 86 (rest ) 99 SB
982 1415 54 (of ) 67 SB
1049 1415 74 (the ) 87 SB
1136 1415 96 (line, ) 109 SB
1245 1415 131 (which ) 145 SB
1390 1415 95 (may ) 109 SB
1499 1415 59 (be ) 73 SB
1572 1415 104 (used ) 118 SB
1690 1415 54 (to ) 68 SB
1758 1415 196 (comment ) 210 SB
1968 1415 63 (on ) 77 SB
2045 1415 61 (the) 61 SB
255 1474 206 (command.) 206 SB
255 1592 45 (If ) 56 SB
311 1592 35 (a ) 46 SB
357 1592 140 (syntax ) 151 SB
508 1592 112 (error ) 123 SB
631 1592 44 (is ) 55 SB
686 1592 181 (detected ) 192 SB
878 1592 63 (on ) 74 SB
952 1592 174 (entering ) 185 SB
1137 1592 59 (an ) 70 SB
1207 1592 220 (interactive ) 231 SB
1438 1592 219 (command, ) 230 SB
1668 1592 169 (RasMol ) 180 SB
1848 1592 186 (indicates ) 197 SB
2045 1592 61 (the) 61 SB
255 1651 172 (location ) 177 SB
432 1651 54 (of ) 59 SB
491 1651 74 (the ) 80 SB
571 1651 112 (error ) 118 SB
689 1651 63 (on ) 69 SB
758 1651 74 (the ) 80 SB
838 1651 206 (command ) 212 SB
1050 1651 83 (line ) 89 SB
1139 1651 60 (by ) 66 SB
1205 1651 155 (placing ) 161 SB
1366 1651 74 (the ) 80 SB
1446 1651 52 ('^' ) 58 SB
1504 1651 196 (character ) 202 SB
1706 1651 126 (under ) 132 SB
1838 1651 74 (the ) 80 SB
1918 1651 188 (offending) 188 SB
255 1710 117 (word ) 120 SB
375 1710 56 (or ) 59 SB
434 1710 209 (character, ) 212 SB
646 1710 84 (and ) 87 SB
733 1710 154 (writing ) 157 SB
890 1710 59 (an ) 62 SB
952 1710 112 (error ) 115 SB
1067 1710 179 (message ) 182 SB
1249 1710 63 (on ) 66 SB
1315 1710 74 (the ) 77 SB
1392 1710 201 (following ) 204 SB
1596 1710 96 (line. ) 99 SB
1695 1710 45 (If ) 49 SB
1744 1710 35 (a ) 39 SB
1783 1710 206 (command ) 210 SB
1993 1710 44 (is ) 48 SB
2041 1710 65 (not) 65 SB
255 1769 227 (recognised ) 235 SB
490 1769 60 (by ) 68 SB
558 1769 182 (RasMol, ) 190 SB
748 1769 74 (the ) 82 SB
830 1769 182 (program ) 190 SB
1020 1769 85 (will ) 93 SB
1113 1769 182 (generate ) 190 SB
1303 1769 59 (an ) 68 SB
1371 1769 295 ('Unrecognised ) 304 SB
1675 1769 230 (command!' ) 239 SB
1914 1769 112 (error ) 121 SB
2035 1769 71 (and) 71 SB
255 1828 190 (redisplay ) 197 SB
452 1828 74 (the ) 81 SB
533 1828 108 (main ) 115 SB
648 1828 171 (prompt. ) 178 SB
826 1828 45 (If ) 52 SB
878 1828 155 (surplus ) 163 SB
1041 1828 243 (information ) 251 SB
1292 1828 44 (is ) 52 SB
1344 1828 120 (given ) 128 SB
1472 1828 50 (at ) 58 SB
1530 1828 74 (the ) 82 SB
1612 1828 84 (end ) 92 SB
1704 1828 54 (of ) 62 SB
1766 1828 35 (a ) 43 SB
1809 1828 206 (command ) 214 SB
2023 1828 83 (line,) 83 SB
255 1887 169 (RasMol ) 178 SB
433 1887 85 (will ) 94 SB
527 1887 165 (execute ) 174 SB
701 1887 74 (the ) 84 SB
785 1887 227 (recognised ) 237 SB
1022 1887 219 (command, ) 229 SB
1251 1887 77 (but ) 87 SB
1338 1887 110 (issue ) 120 SB
1458 1887 74 (the ) 84 SB
1542 1887 173 (warning ) 183 SB
1725 1887 179 (message ) 189 SB
1914 1887 192 ('Warning:) 192 SB
255 1946 183 (Ignoring ) 189 SB
444 1946 86 (rest ) 92 SB
536 1946 54 (of ) 61 SB
597 1946 243 (command!'. ) 250 SB
847 1946 126 (Some ) 133 SB
980 1946 225 (commands ) 232 SB
1212 1946 95 (may ) 102 SB
1314 1946 158 (prompt ) 165 SB
1479 1946 74 (the ) 81 SB
1560 1946 96 (user ) 103 SB
1663 1946 71 (for ) 78 SB
1741 1946 115 (more ) 122 SB
1863 1946 243 (information.) 243 SB
255 2005 1764 (These commands display a different prompt and are discussed in the command reference.) 1764 SB
255 2123 214 (Whenever ) 221 SB
476 2123 169 (RasMol ) 176 SB
652 2123 163 (outputs ) 171 SB
823 2123 215 (diagnostic ) 223 SB
1046 2123 56 (or ) 64 SB
1110 2123 112 (error ) 120 SB
1230 2123 198 (messages ) 206 SB
1436 2123 54 (to ) 62 SB
1498 2123 74 (the ) 82 SB
1580 2123 139 (screen ) 147 SB
1727 2123 136 (owing ) 144 SB
1871 2123 54 (to ) 62 SB
1933 2123 173 (selecting) 173 SB
255 2182 160 (options ) 161 SB
416 2182 108 (from ) 109 SB
525 2182 74 (the ) 75 SB
600 2182 121 (menu ) 122 SB
722 2182 56 (or ) 57 SB
779 2182 158 (picking ) 159 SB
938 2182 153 (objects ) 154 SB
1092 2182 63 (on ) 64 SB
1156 2182 74 (the ) 75 SB
1231 2182 152 (screen, ) 153 SB
1384 2182 74 (the ) 75 SB
1459 2182 155 (current ) 156 SB
1615 2182 206 (command ) 207 SB
1822 2182 83 (line ) 84 SB
1906 2182 44 (is ) 45 SB
1951 2182 155 (cleared.) 155 SB
255 2241 1222 (And the prompt redisplayed after any text has been displayed.) 1222 SB
32 0 0 67 67 1 0 0 61 /Times-Bold /font29 ANSIFont font
255 2419 676 (Command Line Editing) 676 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
255 2547 169 (RasMol ) 174 SB
429 2547 140 (allows ) 145 SB
574 2547 112 (basic ) 117 SB
691 2547 148 (editing ) 153 SB
844 2547 54 (of ) 59 SB
903 2547 74 (the ) 80 SB
983 2547 206 (command ) 212 SB
1195 2547 96 (line. ) 102 SB
1297 2547 179 (Pressing ) 185 SB
1482 2547 125 (either ) 131 SB
1613 2547 229 (backspace, ) 235 SB
1848 2547 131 (delete ) 137 SB
1985 2547 56 (or ) 62 SB
2047 2547 59 (^H) 59 SB
255 2606 85 (will ) 86 SB
341 2606 131 (delete ) 132 SB
473 2606 74 (the ) 76 SB
549 2606 183 (previous ) 185 SB
734 2606 209 (character, ) 211 SB
945 2606 84 (and ) 86 SB
1031 2606 74 (the ) 76 SB
1107 2606 83 (key ) 85 SB
1192 2606 72 (^D ) 74 SB
1266 2606 95 (may ) 97 SB
1363 2606 59 (be ) 61 SB
1424 2606 104 (used ) 106 SB
1530 2606 54 (to ) 56 SB
1586 2606 131 (delete ) 133 SB
1719 2606 74 (the ) 76 SB
1795 2606 196 (character ) 198 SB
1993 2606 113 (under) 113 SB
255 2665 74 (the ) 75 SB
330 2665 152 (cursor. ) 153 SB
483 2665 160 (Several ) 162 SB
645 2665 215 (characters ) 217 SB
862 2665 95 (may ) 97 SB
959 2665 59 (be ) 61 SB
1020 2665 104 (used ) 106 SB
1126 2665 54 (to ) 56 SB
1182 2665 122 (move ) 124 SB
1306 2665 74 (the ) 76 SB
1382 2665 139 (cursor ) 141 SB
1523 2665 122 (along ) 124 SB
1647 2665 74 (the ) 76 SB
1723 2665 206 (command ) 208 SB
1931 2665 96 (line. ) 98 SB
2029 2665 77 (The) 77 SB
255 2724 215 (characters ) 223 SB
478 2724 82 (^B, ) 90 SB
568 2724 76 (^F, ) 84 SB
652 2724 71 (^A ) 79 SB
731 2724 84 (and ) 92 SB
823 2724 67 (^E ) 75 SB
898 2724 122 (move ) 130 SB
1028 2724 74 (the ) 82 SB
1110 2724 139 (cursor ) 147 SB
1257 2724 106 (back ) 114 SB
1371 2724 35 (a ) 43 SB
1414 2724 127 (single ) 136 SB
1550 2724 209 (character, ) 218 SB
1768 2724 171 (forward ) 180 SB
1948 2724 35 (a ) 44 SB
1992 2724 114 (single) 114 SB
255 2783 209 (character, ) 216 SB
471 2783 54 (to ) 62 SB
533 2783 74 (the ) 82 SB
615 2783 205 (beginning ) 213 SB
828 2783 54 (of ) 62 SB
890 2783 74 (the ) 82 SB
972 2783 83 (line ) 91 SB
1063 2783 84 (and ) 92 SB
1155 2783 54 (to ) 62 SB
1217 2783 74 (the ) 82 SB
1299 2783 84 (end ) 92 SB
1391 2783 54 (of ) 62 SB
1453 2783 74 (the ) 82 SB
1535 2783 96 (line, ) 104 SB
1639 2783 261 (respectively. ) 269 SB
1908 2783 129 (When ) 137 SB
2045 2783 61 (the) 61 SB
255 2842 139 (cursor ) 142 SB
397 2842 44 (is ) 47 SB
444 2842 78 (not ) 81 SB
525 2842 50 (at ) 53 SB
578 2842 74 (the ) 77 SB
655 2842 84 (end ) 87 SB
742 2842 54 (of ) 57 SB
799 2842 74 (the ) 77 SB
876 2842 206 (command ) 209 SB
1085 2842 96 (line, ) 99 SB
1184 2842 123 (typed ) 126 SB
1310 2842 215 (characters ) 218 SB
1528 2842 74 (are ) 77 SB
1605 2842 169 (inserted ) 172 SB
1777 2842 90 (into ) 93 SB
1870 2842 74 (the ) 78 SB
1948 2842 83 (line ) 87 SB
2035 2842 71 (and) 71 SB
255 2901 64 (do ) 70 SB
325 2901 78 (not ) 85 SB
410 2901 204 (overwrite ) 211 SB
621 2901 166 (existing ) 173 SB
794 2901 228 (characters. ) 235 SB
1029 2901 117 (After ) 124 SB
1153 2901 35 (a ) 42 SB
1195 2901 206 (command ) 213 SB
1408 2901 83 (line ) 90 SB
1498 2901 78 (has ) 85 SB
1583 2901 105 (been ) 112 SB
1695 2901 147 (edited, ) 154 SB
1849 2901 35 (a ) 42 SB
1891 2901 165 (newline ) 172 SB
2063 2901 43 (or) 43 SB
255 2960 172 (carriage ) 185 SB
440 2960 133 (return ) 146 SB
586 2960 85 (will ) 98 SB
684 2960 113 (enter ) 126 SB
810 2960 74 (the ) 87 SB
897 2960 125 (entire ) 138 SB
1035 2960 96 (line, ) 110 SB
1145 2960 213 (regardless ) 227 SB
1372 2960 54 (of ) 68 SB
1440 2960 134 (where ) 148 SB
1588 2960 74 (the ) 88 SB
1676 2960 139 (cursor ) 153 SB
1829 2960 44 (is ) 58 SB
1887 2960 219 (positioned.) 219 SB
255 3019 178 (Because ) 183 SB
438 3019 169 (RasMol ) 174 SB
612 3019 44 (is ) 49 SB
661 3019 142 (unable ) 147 SB
808 3019 54 (to ) 59 SB
867 3019 122 (move ) 127 SB
994 3019 74 (the ) 79 SB
1073 3019 139 (cursor ) 144 SB
1217 3019 63 (up ) 68 SB
1285 3019 54 (to ) 60 SB
1345 3019 74 (the ) 80 SB
1425 3019 183 (previous ) 189 SB
1614 3019 96 (line, ) 102 SB
1716 3019 96 (care ) 102 SB
1818 3019 109 (must ) 115 SB
1933 3019 59 (be ) 65 SB
1998 3019 108 (taken) 108 SB
255 3078 119 (when ) 129 SB
384 3078 148 (editing ) 158 SB
542 3078 225 (commands ) 235 SB
777 3078 89 (that ) 99 SB
876 3078 113 (wrap ) 124 SB
1000 3078 102 (over ) 113 SB
1113 3078 151 (several ) 162 SB
1275 3078 115 (lines. ) 126 SB
1401 3078 54 (In ) 65 SB
1466 3078 74 (the ) 85 SB
1551 3078 120 (event ) 131 SB
1682 3078 89 (that ) 100 SB
1782 3078 163 (another ) 174 SB
1956 3078 150 (process) 150 SB
1 #C
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255 283 276 (on the screen.) 276 SB
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2004 696 102 (more) 102 SB
255 755 835 (short command lines and fewer long ones.) 835 SB
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384 873 100 (with ) 103 SB
487 873 74 (the ) 77 SB
564 873 209 (Microsoft ) 213 SB
777 873 201 (Windows ) 205 SB
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1254 932 79 (use ) 90 SB
1344 932 74 (the ) 85 SB
1429 932 139 (cursor ) 150 SB
1579 932 155 (control ) 166 SB
1745 932 215 (characters ) 226 SB
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2045 932 61 (the) 61 SB
255 991 197 (keyboard ) 199 SB
454 991 54 (to ) 56 SB
510 991 217 (abbreviate ) 219 SB
729 991 74 (the ) 76 SB
805 991 155 (control ) 157 SB
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1367 991 77 (left ) 80 SB
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1802 991 74 (the ) 77 SB
1879 991 113 (same ) 116 SB
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255 1050 54 (as ) 55 SB
310 1050 63 (^F ) 64 SB
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460 1050 82 (^B, ) 84 SB
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924 1050 171 (forward ) 173 SB
1097 1050 84 (and ) 86 SB
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1328 1050 127 (single ) 129 SB
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255 1109 74 (the ) 77 SB
332 1109 63 (up ) 66 SB
398 1109 84 (and ) 87 SB
485 1109 124 (down ) 127 SB
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754 1109 102 (keys ) 105 SB
859 1109 105 (have ) 108 SB
967 1109 74 (the ) 77 SB
1044 1109 113 (same ) 116 SB
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1551 1109 85 (^N, ) 89 SB
1640 1109 214 (producing ) 218 SB
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1936 1109 170 (previous) 170 SB
255 1168 1052 (and next entries in the command history respectively.) 1052 SB
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255 1346 771 (Dimensions within RasMol) 771 SB
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332 1474 233 (dimensions ) 238 SB
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624 1474 182 (RasMol, ) 187 SB
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978 1474 101 (radii ) 106 SB
1084 1474 84 (and ) 90 SB
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1386 1474 13 ( ) 19 SB
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255 1533 124 ('units' ) 135 SB
390 1533 56 (or ) 67 SB
457 1533 243 (Angstroms. ) 254 SB
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812 1533 169 (RasMol ) 180 SB
992 1533 108 (units ) 119 SB
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1232 1533 91 (first ) 102 SB
1334 1533 226 (introduced ) 237 SB
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1637 1533 121 (allow ) 133 SB
1770 1533 224 (reasonably ) 236 SB
2006 1533 100 (sized) 100 SB
255 1592 191 (values to ) 192 SB
447 1592 59 (be ) 60 SB
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695 1592 71 (for ) 72 SB
767 1592 110 (most ) 111 SB
878 1592 54 (of ) 55 SB
933 1592 74 (the ) 75 SB
1008 1592 221 (operations ) 222 SB
1230 1592 219 (performed ) 220 SB
1450 1592 49 (in ) 50 SB
1500 1592 182 (RasMol. ) 183 SB
1683 1592 48 (A ) 49 SB
1732 1592 127 (single ) 128 SB
1860 1592 169 (RasMol ) 170 SB
2030 1592 76 (unit) 76 SB
255 1651 255 (corresponds ) 256 SB
511 1651 54 (to ) 55 SB
566 1651 166 (1/250th ) 167 SB
733 1651 54 (of ) 55 SB
788 1651 59 (an ) 61 SB
849 1651 224 (Angstrom, ) 226 SB
1075 1651 193 (therefore ) 195 SB
1270 1651 74 (the ) 76 SB
1346 1651 110 (most ) 112 SB
1458 1651 213 (frequently ) 215 SB
1673 1651 104 (used ) 106 SB
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1994 1651 49 (in ) 51 SB
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255 1710 207 (hundreds. ) 214 SB
469 1710 83 (For ) 90 SB
559 1710 83 (this ) 90 SB
649 1710 156 (reason, ) 163 SB
812 1710 40 (if ) 47 SB
859 1710 169 (RasMol ) 177 SB
1036 1710 44 (is ) 52 SB
1088 1710 120 (given ) 128 SB
1216 1710 35 (a ) 43 SB
1259 1710 174 (distance ) 182 SB
1441 1710 212 (parameter ) 220 SB
1661 1710 89 (that ) 97 SB
1758 1710 152 (doesn't ) 160 SB
1918 1710 158 (contain ) 166 SB
2084 1710 22 (a) 22 SB
255 1769 546 (decimal point it is assumed ) 547 SB
802 1769 54 (to ) 55 SB
857 1769 59 (be ) 60 SB
917 1769 49 (in ) 50 SB
967 1769 169 (RasMol ) 170 SB
1137 1769 121 (units. ) 122 SB
1259 1769 83 (For ) 84 SB
1343 1769 190 (example, ) 191 SB
1534 1769 74 (the ) 75 SB
1609 1769 206 (command ) 207 SB
1816 1769 194 ("spacefill ) 195 SB
2011 1769 95 (300") 95 SB
255 1828 1285 (sepcifies a sphere radius of 300 RasMol units, or 1.2 Angstroms.) 1285 SB
255 1946 1445 (However, dimensions within RasMol can also be specified in Angstroms ) 1446 SB
1701 1946 60 (by ) 61 SB
1762 1946 155 (placing ) 156 SB
1918 1946 35 (a ) 36 SB
1954 1946 152 (decimal) 152 SB
255 2005 1157 (point in the number. For example, "spacefill 1.2" specifies ) 1158 SB
1413 2005 35 (a ) 36 SB
1449 2005 142 (sphere ) 143 SB
1592 2005 133 (radius ) 134 SB
1726 2005 49 (in ) 50 SB
1776 2005 243 (Angstroms. ) 244 SB
2020 2005 86 (This) 86 SB
255 2064 1534 (is particularly useful for the cut-off distance parameter in 'within' expressions.) 1534 SB
32 0 0 67 67 1 0 0 61 /Times-Bold /font29 ANSIFont font
255 2242 777 (Start-up Initialisation Files) 777 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
255 2370 112 (Each ) 115 SB
370 2370 99 (time ) 102 SB
472 2370 169 (RasMol ) 172 SB
644 2370 44 (is ) 47 SB
691 2370 161 (started, ) 164 SB
855 2370 40 (it ) 43 SB
898 2370 180 (searches ) 183 SB
1081 2370 71 (for ) 74 SB
1155 2370 59 (an ) 63 SB
1218 2370 252 (initialisation ) 256 SB
1474 2370 74 (file ) 78 SB
1552 2370 54 (of ) 58 SB
1610 2370 225 (commands ) 229 SB
1839 2370 54 (to ) 58 SB
1897 2370 79 (run ) 83 SB
1980 2370 126 (before) 126 SB
255 2429 74 (the ) 85 SB
340 2429 206 (command ) 217 SB
557 2429 158 (prompt ) 170 SB
727 2429 44 (is ) 56 SB
783 2429 204 (presented ) 216 SB
999 2429 54 (to ) 66 SB
1065 2429 74 (the ) 86 SB
1151 2429 109 (user. ) 121 SB
1272 2429 90 (The ) 102 SB
1374 2429 74 (file ) 86 SB
1460 2429 44 (is ) 56 SB
1516 2429 128 (called ) 140 SB
1656 2429 238 (".rasmolrc" ) 250 SB
1906 2429 63 (on ) 75 SB
1981 2429 125 (UNIX) 125 SB
255 2488 180 (systems, ) 188 SB
443 2488 84 (and ) 92 SB
535 2488 342 ("RASMOL.INI" ) 350 SB
885 2488 63 (on ) 71 SB
956 2488 134 (VMS, ) 143 SB
1099 2488 202 (MS-DOS ) 211 SB
1310 2488 84 (and ) 93 SB
1403 2488 209 (Microsoft ) 218 SB
1621 2488 201 (Windows ) 210 SB
1831 2488 189 (Systems. ) 198 SB
2029 2488 77 (The) 77 SB
255 2547 1711 (format and execution of the this file is identical to that of the RasMol script command.) 1711 SB
255 2665 169 (RasMol ) 170 SB
425 2665 91 (first ) 92 SB
517 2665 121 (looks ) 122 SB
639 2665 71 (for ) 72 SB
711 2665 74 (the ) 76 SB
787 2665 252 (initialisation ) 254 SB
1041 2665 74 (file ) 76 SB
1117 2665 49 (in ) 51 SB
1168 2665 74 (the ) 76 SB
1244 2665 155 (current ) 157 SB
1401 2665 205 (directory, ) 207 SB
1608 2665 84 (and ) 86 SB
1694 2665 40 (if ) 42 SB
1736 2665 40 (it ) 42 SB
1778 2665 44 (is ) 46 SB
1824 2665 78 (not ) 80 SB
1904 2665 128 (found ) 130 SB
2034 2665 72 (will) 72 SB
255 2724 918 (look for it in the user's home directory. On all ) 919 SB
1174 2724 167 (systems ) 168 SB
1342 2724 74 (the ) 75 SB
1417 2724 260 (environment ) 261 SB
1678 2724 168 (variable ) 169 SB
1847 2724 176 ('HOME' ) 177 SB
2024 2724 82 (may) 82 SB
255 2783 59 (be ) 61 SB
316 2783 104 (used ) 106 SB
422 2783 118 (name ) 120 SB
542 2783 74 (the ) 76 SB
618 2783 123 (user's ) 125 SB
743 2783 122 (home ) 124 SB
867 2783 241 (appropriate ) 243 SB
1110 2783 205 (directory. ) 207 SB
1317 2783 45 (If ) 47 SB
1364 2783 63 (no ) 65 SB
1429 2783 180 (personal ) 183 SB
1612 2783 252 (initialisation ) 255 SB
1867 2783 74 (file ) 77 SB
1944 2783 44 (is ) 47 SB
1991 2783 115 (found) 115 SB
255 2842 74 (the ) 89 SB
344 2842 182 (program ) 197 SB
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677 2842 71 (for ) 86 SB
763 2842 74 (the ) 90 SB
853 2842 74 (file ) 90 SB
943 2842 225 ("rasmolrc" ) 241 SB
1184 2842 73 (\(or ) 89 SB
1273 2842 342 ("RASMOLRC"\) ) 358 SB
1631 2842 49 (in ) 65 SB
1696 2842 74 (the ) 90 SB
1786 2842 169 (RasMol ) 185 SB
1971 2842 135 (system) 135 SB
255 2901 970 (directory pointed to by the environment variable ) 971 SB
1226 2901 362 (RASMOLPATH. ) 363 SB
1589 2901 99 (This ) 100 SB
1689 2901 192 (directory ) 193 SB
1882 2901 144 (should ) 145 SB
2027 2901 79 (also) 79 SB
255 2960 158 (contain ) 159 SB
414 2960 74 (the ) 75 SB
489 2960 150 (on-line ) 151 SB
640 2960 96 (help ) 97 SB
737 2960 74 (file ) 76 SB
813 2960 273 ("rasmol.hlp". ) 275 SB
1088 2960 73 (On ) 75 SB
1163 2960 138 (UNIX ) 140 SB
1303 2960 167 (systems ) 169 SB
1472 2960 349 (RASMOLPATH ) 351 SB
1823 2960 44 (is ) 46 SB
1869 2960 179 (typically ) 181 SB
2050 2960 56 (set) 56 SB
255 3019 558 (to be "/usr/local/lib/rasmol".) 558 SB
1 #C
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1354 224 85 (will ) 90 SB
1444 224 78 (not ) 83 SB
1527 224 182 (generate ) 187 SB
1714 224 59 (an ) 64 SB
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2079 224 27 (if) 27 SB
255 283 74 (the ) 82 SB
337 283 74 (file ) 82 SB
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706 283 90 (The ) 98 SB
804 283 148 (system ) 156 SB
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1287 283 220 (commonly ) 229 SB
1516 283 104 (used ) 113 SB
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2065 283 41 (to) 41 SB
255 342 151 (display ) 154 SB
409 342 243 (information ) 246 SB
655 342 125 (about ) 128 SB
783 342 74 (the ) 77 SB
860 342 107 (local ) 110 SB
970 342 228 (installation ) 231 SB
1201 342 84 (and ) 88 SB
1289 342 99 (who ) 103 SB
1392 342 54 (to ) 58 SB
1450 342 159 (contact ) 163 SB
1613 342 71 (for ) 75 SB
1688 342 96 (help ) 100 SB
1788 342 158 (contain ) 162 SB
1950 342 156 (RasMol) 156 SB
255 401 1764 (echo commands detailing a telephone number or e-mail address to be used for contacting) 1764 SB
32 0 0 67 67 1 0 0 61 /Times-Bold /font29 ANSIFont font
255 579 856 (Inter-process Communication) 856 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
255 707 169 (RasMol ) 185 SB
440 707 184 (supports ) 200 SB
640 707 108 (Inter ) 124 SB
764 707 166 (Process ) 183 SB
947 707 328 (Communication ) 345 SB
1292 707 125 (\(IPC\) ) 142 SB
1434 707 49 (in ) 66 SB
1500 707 85 (one ) 102 SB
1602 707 108 (form ) 125 SB
1727 707 56 (or ) 73 SB
1800 707 163 (another ) 180 SB
1980 707 63 (on ) 80 SB
2060 707 46 (all) 46 SB
255 766 214 (platforms. ) 220 SB
475 766 137 (Under ) 143 SB
618 766 209 (Microsoft ) 215 SB
833 766 214 (Windows, ) 221 SB
1054 766 91 (IPC ) 98 SB
1152 766 44 (is ) 51 SB
1203 766 266 (implemented ) 273 SB
1476 766 118 (using ) 125 SB
1601 766 189 (Dynamic ) 196 SB
1797 766 108 (Data ) 115 SB
1912 766 194 (Exchange) 194 SB
255 825 163 (\(DDE\), ) 175 SB
430 825 63 (on ) 75 SB
505 825 74 (the ) 86 SB
591 825 206 (Macinosh ) 218 SB
809 825 91 (IPC ) 103 SB
912 825 44 (is ) 56 SB
968 825 266 (implemented ) 278 SB
1246 825 118 (using ) 131 SB
1377 825 132 (Apple ) 145 SB
1522 825 148 (Events ) 161 SB
1683 825 84 (and ) 97 SB
1780 825 63 (on ) 76 SB
1856 825 49 (X ) 62 SB
1918 825 188 (Windows) 188 SB
255 884 1699 (systems IPC is implemented using John Ousterhaut's Tcl/Tk communication protocol.) 1699 SB
255 1002 42 (1]) 42 SB
405 1002 824 (When RasMol starts up on an X window ) 825 SB
1230 1002 148 (system ) 149 SB
1379 1002 40 (it ) 41 SB
1420 1002 181 (registers ) 182 SB
1602 1002 108 (itself ) 109 SB
1711 1002 100 (with ) 101 SB
1812 1002 74 (the ) 75 SB
1887 1002 49 (X ) 50 SB
1937 1002 169 (Window) 169 SB
255 1061 1143 (Server as a Tcl interpreter. From within a Tcl application ) 1144 SB
1399 1061 103 (such ) 104 SB
1503 1061 54 (as ) 55 SB
1558 1061 157 ("wish", ) 158 SB
1716 1061 87 (you ) 88 SB
1804 1061 81 (can ) 82 SB
1886 1061 79 (use ) 80 SB
1966 1061 74 (the ) 75 SB
2041 1061 65 (Tcl) 65 SB
255 1120 519 (command "winfo interps" ) 520 SB
775 1120 54 (to ) 55 SB
830 1120 209 (determine ) 210 SB
1040 1120 74 (the ) 75 SB
1115 1120 190 (currently ) 191 SB
1306 1120 162 (register ) 163 SB
1469 1120 240 (interpreters ) 241 SB
1710 1120 63 (on ) 64 SB
1774 1120 89 (that ) 90 SB
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2029 1120 77 (The) 77 SB
255 1179 91 (first ) 95 SB
350 1179 173 (instance ) 177 SB
527 1179 54 (of ) 58 SB
585 1179 169 (RasMol ) 173 SB
758 1179 181 (registers ) 185 SB
943 1179 108 (itself ) 112 SB
1055 1179 54 (as ) 58 SB
1113 1179 199 ("rasmol", ) 203 SB
1316 1179 74 (the ) 78 SB
1394 1179 151 (second ) 155 SB
1549 1179 54 (as ) 58 SB
1607 1179 166 ("rasmol ) 170 SB
1777 1179 96 (#2", ) 100 SB
1877 1179 74 (the ) 78 SB
1955 1179 106 (third ) 110 SB
2065 1179 41 (as) 41 SB
255 1238 166 ("rasmol ) 170 SB
425 1238 83 (#3" ) 87 SB
512 1238 84 (and ) 88 SB
600 1238 58 (so ) 62 SB
662 1238 76 (on. ) 80 SB
742 1238 90 (The ) 94 SB
836 1238 78 (Tcl ) 82 SB
918 1238 221 (interpreter ) 225 SB
1143 1238 81 (can ) 85 SB
1228 1238 123 (easily ) 127 SB
1355 1238 103 (send ) 107 SB
1462 1238 35 (a ) 39 SB
1501 1238 206 (command ) 211 SB
1712 1238 54 (to ) 59 SB
1771 1238 146 (rasmol ) 151 SB
1922 1238 118 (using ) 123 SB
2045 1238 61 (the) 61 SB
255 1297 154 (built-in ) 155 SB
410 1297 119 ('send' ) 120 SB
530 1297 219 (command. ) 220 SB
750 1297 169 (RasMol ) 170 SB
920 1297 201 (interprets ) 203 SB
1123 1297 74 (the ) 76 SB
1199 1297 125 (string ) 127 SB
1326 1297 212 (parameter ) 214 SB
1540 1297 54 (to ) 56 SB
1596 1297 74 (the ) 76 SB
1672 1297 103 (send ) 105 SB
1777 1297 206 (command ) 208 SB
1985 1297 78 (not ) 80 SB
2065 1297 41 (as) 41 SB
255 1356 35 (a ) 50 SB
305 1356 78 (Tcl ) 93 SB
398 1356 176 (function ) 191 SB
589 1356 54 (to ) 69 SB
658 1356 165 (execute ) 180 SB
838 1356 77 (but ) 92 SB
930 1356 54 (as ) 69 SB
999 1356 35 (a ) 50 SB
1049 1356 169 (RasMol ) 184 SB
1233 1356 219 (command. ) 234 SB
1467 1356 152 (Hence, ) 167 SB
1634 1356 137 (typing ) 152 SB
1786 1356 123 ("send ) 139 SB
1925 1356 181 ({rasmol}) 181 SB
255 1415 272 ({background ) 277 SB
532 1415 121 (red}" ) 127 SB
659 1415 90 (into ) 96 SB
755 1415 74 (the ) 80 SB
835 1415 104 (wish ) 110 SB
945 1415 221 (interpreter ) 227 SB
1172 1415 85 (will ) 91 SB
1263 1415 123 (cause ) 129 SB
1392 1415 196 (RasMol's ) 202 SB
1594 1415 151 (display ) 157 SB
1751 1415 172 (window ) 178 SB
1929 1415 54 (to ) 60 SB
1989 1415 117 (hange) 117 SB
255 1474 154 (colour. ) 156 SB
411 1474 129 (Using ) 131 SB
542 1474 74 (the ) 76 SB
618 1474 113 (same ) 115 SB
733 1474 193 (encoding ) 195 SB
928 1474 54 (as ) 57 SB
985 1474 236 (Microsoft's ) 239 SB
1224 1474 116 (DDE ) 119 SB
1343 1474 174 (Execute ) 177 SB
1520 1474 195 (protocol, ) 198 SB
1718 1474 173 (multiple ) 176 SB
1894 1474 212 (commands) 212 SB
255 1533 95 (may ) 105 SB
360 1533 59 (be ) 69 SB
429 1533 93 (sent ) 103 SB
532 1533 49 (in ) 59 SB
591 1533 35 (a ) 45 SB
636 1533 127 (single ) 137 SB
773 1533 119 ('send' ) 129 SB
902 1533 60 (by ) 70 SB
972 1533 155 (placing ) 165 SB
1137 1533 74 (the ) 84 SB
1221 1533 246 (consecutive ) 256 SB
1477 1533 225 (commands ) 236 SB
1713 1533 49 (in ) 60 SB
1773 1533 143 (square ) 154 SB
1927 1533 179 (brackets.) 179 SB
255 1592 1596 (RasMol will execute all of the commands in a 'send' before refreshing the screen.) 1596 SB
255 1710 42 (2]) 42 SB
405 1710 137 (Under ) 156 SB
561 1710 209 (Microsoft ) 228 SB
789 1710 214 (Windows, ) 233 SB
1022 1710 169 (RasMol ) 188 SB
1210 1710 184 (supports ) 203 SB
1413 1710 35 (a ) 54 SB
1467 1710 194 (complete ) 213 SB
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2029 1710 77 (The) 77 SB
255 1769 174 (simplest ) 181 SB
436 1769 128 (layers ) 135 SB
571 1769 54 (of ) 61 SB
632 1769 74 (the ) 81 SB
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1330 1769 164 (sending ) 172 SB
1502 1769 35 (a ) 43 SB
1545 1769 116 (DDE ) 124 SB
1669 1769 174 (Execute ) 182 SB
1851 1769 206 (command ) 214 SB
2065 1769 41 (to) 41 SB
255 1828 230 (application ) 241 SB
496 1828 209 ("RasWin" ) 220 SB
716 1828 84 (and ) 95 SB
811 1828 82 (any ) 93 SB
904 1828 126 (topic. ) 137 SB
1041 1828 99 (This ) 110 SB
1151 1828 85 (will ) 96 SB
1247 1828 101 (start ) 112 SB
1359 1828 35 (a ) 46 SB
1405 1828 116 (DDE ) 128 SB
1533 1828 266 (conversation ) 278 SB
1811 1828 100 (with ) 112 SB
1923 1828 74 (the ) 86 SB
2009 1828 97 (most) 97 SB
255 1887 170 (recently ) 180 SB
435 1887 189 (launched ) 199 SB
634 1887 173 (instance ) 183 SB
817 1887 54 (of ) 64 SB
881 1887 182 (RasMol. ) 192 SB
1073 1887 199 (Although ) 209 SB
1282 1887 59 (an ) 69 SB
1351 1887 113 (topic ) 123 SB
1474 1887 118 (name ) 128 SB
1602 1887 81 (can ) 91 SB
1693 1887 59 (be ) 69 SB
1762 1887 117 (used, ) 128 SB
1890 1887 74 (the ) 85 SB
1975 1887 79 (use ) 90 SB
2065 1887 41 (of) 41 SB
255 1946 1387 ("System" and/or "RemoteControl" are recommended. Once again the ) 1388 SB
1643 1946 180 (contents ) 181 SB
1824 1946 54 (of ) 55 SB
1879 1946 74 (the ) 75 SB
1954 1946 152 (execute) 152 SB
255 2005 176 (package ) 177 SB
432 2005 150 (consist ) 151 SB
583 2005 54 (of ) 55 SB
638 2005 35 (a ) 36 SB
674 2005 125 (string ) 126 SB
800 2005 71 (for ) 72 SB
872 2005 169 (RasMol ) 170 SB
1042 2005 54 (to ) 55 SB
1097 2005 178 (execute. ) 179 SB
1276 2005 45 (If ) 46 SB
1322 2005 74 (the ) 76 SB
1398 2005 91 (first ) 93 SB
1491 2005 323 (non-whitespace ) 325 SB
1816 2005 196 (character ) 198 SB
2014 2005 44 (is ) 46 SB
2060 2005 46 (an) 46 SB
255 2064 110 (open ) 117 SB
372 2064 143 (square ) 150 SB
522 2064 173 (bracket, ) 180 SB
702 2064 74 (the ) 81 SB
783 2064 125 (string ) 132 SB
915 2064 44 (is ) 52 SB
967 2064 229 (interpreted ) 237 SB
1204 2064 54 (to ) 62 SB
1266 2064 59 (be ) 67 SB
1333 2064 35 (a ) 43 SB
1376 2064 194 (sequence ) 202 SB
1578 2064 54 (of ) 62 SB
1640 2064 246 (consecutive ) 254 SB
1894 2064 212 (commands) 212 SB
255 2123 185 (enclosed ) 202 SB
457 2123 49 (in ) 67 SB
524 2123 143 (square ) 161 SB
685 2123 179 (brackets ) 197 SB
882 2123 206 (otherwise ) 224 SB
1106 2123 74 (the ) 92 SB
1198 2123 125 (string ) 143 SB
1341 2123 169 (consists ) 187 SB
1528 2123 54 (of ) 72 SB
1600 2123 84 (just ) 102 SB
1702 2123 35 (a ) 53 SB
1755 2123 127 (single ) 145 SB
1900 2123 206 (command.) 206 SB
255 2182 236 (Commands ) 248 SB
503 2182 49 (in ) 61 SB
564 2182 143 (square ) 155 SB
719 2182 179 (brackets ) 191 SB
910 2182 95 (may ) 107 SB
1017 2182 210 (optionally ) 223 SB
1240 2182 59 (be ) 72 SB
1312 2182 202 (separated ) 215 SB
1527 2182 60 (by ) 73 SB
1600 2182 232 (whitespace ) 245 SB
1845 2182 141 (and/or ) 154 SB
1999 2182 107 (semi-) 107 SB
255 2241 155 (colons. ) 156 SB
411 2241 169 (RasMol ) 170 SB
581 2241 81 (can ) 82 SB
663 2241 92 (also ) 93 SB
756 2241 72 (act ) 73 SB
829 2241 54 (as ) 55 SB
884 2241 35 (a ) 36 SB
920 2241 105 ('data ) 106 SB
1026 2241 142 (server' ) 143 SB
1169 2241 226 (supporting ) 227 SB
1396 2241 91 (hot, ) 92 SB
1488 2241 98 (cold ) 99 SB
1587 2241 84 (and ) 85 SB
1672 2241 125 (warm ) 126 SB
1798 2241 118 (links. ) 120 SB
1918 2241 188 (Currently) 188 SB
255 2300 165 (support ) 167 SB
422 2300 116 (DDE ) 118 SB
540 2300 118 (items ) 120 SB
660 2300 155 (include ) 157 SB
817 2300 159 ('Name', ) 161 SB
978 2300 165 ('Image', ) 167 SB
1145 2300 129 ('Pick', ) 131 SB
1276 2300 152 ('Count' ) 154 SB
1430 2300 131 (which ) 133 SB
1563 2300 147 (denote ) 149 SB
1712 2300 74 (the ) 76 SB
1788 2300 198 (Molecule ) 200 SB
1988 2300 118 (name,) 118 SB
255 2359 74 (the ) 81 SB
336 2359 190 (currently ) 198 SB
534 2359 198 (displayed ) 206 SB
740 2359 131 (image ) 139 SB
879 2359 66 (\(in ) 74 SB
953 2359 209 (Microsoft ) 217 SB
1170 2359 99 (DIB ) 107 SB
1277 2359 175 (format\), ) 183 SB
1460 2359 74 (the ) 82 SB
1542 2359 113 (atom ) 121 SB
1663 2359 223 (expression ) 231 SB
1894 2359 54 (of ) 62 SB
1956 2359 74 (the ) 82 SB
2038 2359 68 (last) 68 SB
255 2418 144 (picked ) 145 SB
400 2418 113 (atom ) 114 SB
514 2418 73 (\(or ) 74 SB
588 2418 59 (an ) 60 SB
648 2418 135 (empty ) 136 SB
784 2418 142 (string\) ) 143 SB
927 2418 84 (and ) 85 SB
1012 2418 74 (the ) 75 SB
1087 2418 162 (number ) 163 SB
1250 2418 54 (of ) 55 SB
1305 2418 172 (selected ) 173 SB
1478 2418 132 (atoms ) 133 SB
1611 2418 261 (respectively. ) 262 SB
1873 2418 129 (Using ) 131 SB
2004 2418 35 (a ) 37 SB
2041 2418 65 (hot) 65 SB
255 2477 56 (or ) 61 SB
316 2477 125 (warm ) 130 SB
446 2477 86 (link ) 91 SB
537 2477 63 (on ) 68 SB
605 2477 74 (the ) 79 SB
684 2477 116 ('Pick' ) 121 SB
805 2477 99 (item ) 104 SB
909 2477 71 (for ) 77 SB
986 2477 190 (example, ) 196 SB
1182 2477 140 (allows ) 146 SB
1328 2477 59 (an ) 65 SB
1393 2477 230 (application ) 236 SB
1629 2477 103 (such ) 109 SB
1738 2477 35 (a ) 41 SB
1779 2477 194 (Microsot ) 200 SB
1979 2477 127 (Word,) 127 SB
255 2536 1615 (Excel or Visual Basic to respond each time the user clicks on an atom in RasMol.) 1615 SB
255 2654 42 (3]) 42 SB
405 2654 659 (RasMol on the Apple Macintosh ) 660 SB
1065 2654 184 (supports ) 185 SB
1250 2654 280 (AppleEvents. ) 281 SB
1531 2654 201 (Currently ) 202 SB
1733 2654 74 (the ) 75 SB
1808 2654 98 (only ) 99 SB
1907 2654 199 (supported) 199 SB
255 2713 267 (AppleEvents ) 269 SB
524 2713 74 (are ) 76 SB
600 2713 74 (the ) 76 SB
676 2713 96 (four ) 98 SB
774 2713 116 ('core' ) 118 SB
892 2713 152 (events, ) 154 SB
1046 2713 120 (Open ) 123 SB
1169 2713 256 (Application, ) 259 SB
1428 2713 120 (Open ) 123 SB
1551 2713 233 (Document, ) 236 SB
1787 2713 109 (Print ) 112 SB
1899 2713 207 (Document) 207 SB
255 2772 84 (and ) 101 SB
356 2772 114 (Quit. ) 131 SB
487 2772 209 (However, ) 226 SB
713 2772 169 (because ) 186 SB
899 2772 327 (OpenDocument ) 344 SB
1243 2772 228 (determines ) 245 SB
1488 2772 59 (its ) 76 SB
1564 2772 153 (actions ) 170 SB
1734 2772 60 (by ) 77 SB
1811 2772 74 (the ) 91 SB
1902 2772 101 (file's ) 119 SB
2021 2772 85 (type) 85 SB
255 2831 194 (signature ) 199 SB
454 2831 83 (this ) 88 SB
542 2831 81 (can ) 86 SB
628 2831 59 (be ) 64 SB
692 2831 104 (used ) 109 SB
801 2831 54 (to ) 59 SB
860 2831 219 (implement ) 225 SB
1085 2831 157 (generic ) 163 SB
1248 2831 104 (IPC. ) 110 SB
1358 2831 178 (Because ) 184 SB
1542 2831 169 (RasMol ) 175 SB
1717 2831 71 (for ) 77 SB
1794 2831 74 (the ) 80 SB
1874 2831 232 (Machintosh) 232 SB
255 2890 123 (treats ) 131 SB
386 2890 59 (all ) 67 SB
453 2890 93 (files ) 101 SB
554 2890 54 (of ) 62 SB
616 2890 13 ( ) 21 SB
637 2890 98 (type ) 106 SB
743 2890 164 ('RSML' ) 172 SB
915 2890 54 (as ) 62 SB
977 2890 155 (scripts, ) 163 SB
1140 2890 74 (the ) 82 SB
1222 2890 164 (sending ) 172 SB
1394 2890 230 (application ) 238 SB
1632 2890 106 (need ) 114 SB
1746 2890 98 (only ) 106 SB
1852 2890 116 (place ) 125 SB
1977 2890 59 (all ) 68 SB
2045 2890 61 (the) 61 SB
255 2949 1661 (commands to be executed in a temporary file, set the type of the file to 'RSML' and ) 1662 SB
1917 2949 98 (then ) 99 SB
2016 2949 90 (send) 90 SB
255 3008 1317 (RasMol an OpenDocument AppleEvent with the file as parameter.) 1317 SB
1 #C
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565 412 74 (the ) 75 SB
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846 412 54 (of ) 55 SB
901 412 220 (interactive ) 221 SB
1122 412 225 (commands ) 226 SB
1348 412 123 (typed ) 124 SB
1472 412 50 (at ) 51 SB
1523 412 74 (the ) 75 SB
1598 412 237 ("RasMol>" ) 238 SB
1836 412 158 (prompt ) 159 SB
1995 412 49 (in ) 50 SB
2045 412 61 (the) 61 SB
255 471 174 (terminal ) 184 SB
439 471 185 (window. ) 195 SB
634 471 112 (Each ) 122 SB
756 471 206 (command ) 217 SB
973 471 109 (must ) 120 SB
1093 471 59 (be ) 70 SB
1163 471 120 (given ) 131 SB
1294 471 63 (on ) 74 SB
1368 471 35 (a ) 46 SB
1414 471 177 (separate ) 188 SB
1602 471 96 (line. ) 107 SB
1709 471 216 (Keywords ) 227 SB
1936 471 74 (are ) 85 SB
2021 471 85 (case) 85 SB
255 530 1851 (insensitive and may be entered in either upper or lower case letters. All whitespace characters) 1851 SB
255 589 1224 (are ignored except to separate keywords and their arguments.) 1224 SB
255 707 1495 (The commands/keywords currently recognised by RasMol are given below.) 1495 SB
32 0 0 50 50 0 0 0 46 /Times-Bold /font29 ANSIFont font
405 825 205 (backbone) 205 SB
855 825 257 (background) 257 SB
1305 825 132 (centre) 132 SB
1755 825 204 (clipboard) 204 SB
405 884 134 (colour) 134 SB
855 884 164 (connect) 164 SB
1305 884 77 (cpk) 77 SB
1755 884 89 (dots) 89 SB
405 943 130 (define) 130 SB
855 943 97 (echo) 97 SB
1305 943 77 (exit) 77 SB
1755 943 156 (hbonds) 156 SB
405 1002 91 (help) 91 SB
855 1002 101 (label) 101 SB
1305 1002 91 (load) 91 SB
1755 1002 108 (print) 108 SB
405 1061 87 (quit) 87 SB
855 1061 211 (renumber) 211 SB
1305 1061 101 (reset) 101 SB
1755 1061 153 (restrict) 153 SB
405 1120 163 (ribbons) 163 SB
855 1120 127 (rotate) 127 SB
1305 1120 91 (save) 91 SB
1755 1120 121 (script) 121 SB
405 1179 115 (select) 115 SB
855 1179 58 (set) 58 SB
1305 1179 108 (show) 108 SB
1755 1179 85 (slab) 85 SB
405 1238 137 (source) 137 SB
855 1238 172 (spacefill) 172 SB
1305 1238 166 (ssbonds) 166 SB
1755 1238 157 (strands) 157 SB
405 1297 195 (structure) 195 SB
855 1297 107 (trace) 107 SB
1305 1297 187 (translate) 187 SB
1755 1297 218 (wireframe) 218 SB
405 1356 110 (write) 110 SB
855 1356 74 (zap) 74 SB
1305 1356 112 (zoom) 112 SB
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255 1715 750 (         backbone ) 750 SB
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255 1832 90 (The ) 92 SB
347 1832 169 (RasMol ) 171 SB
518 1832 218 ('backbone' ) 220 SB
738 1832 206 (command ) 208 SB
946 1832 160 (permits ) 162 SB
1108 1832 74 (the ) 76 SB
1184 1832 295 (representation ) 297 SB
1481 1832 54 (of ) 56 SB
1537 1832 35 (a ) 37 SB
1574 1832 245 (polypeptide ) 248 SB
1822 1832 202 (backbone ) 205 SB
2027 1832 54 (as ) 57 SB
2084 1832 22 (a) 22 SB
255 1891 124 (series ) 130 SB
385 1891 54 (of ) 60 SB
445 1891 131 (bonds ) 137 SB
582 1891 229 (connecting ) 235 SB
817 1891 74 (the ) 81 SB
898 1891 177 (adjacent ) 184 SB
1082 1891 118 (alpha ) 125 SB
1207 1891 167 (carbons ) 174 SB
1381 1891 54 (of ) 61 SB
1442 1891 103 (each ) 110 SB
1552 1891 134 (amino ) 141 SB
1693 1891 94 (acid ) 101 SB
1794 1891 49 (in ) 56 SB
1850 1891 35 (a ) 42 SB
1892 1891 130 (chain. ) 137 SB
2029 1891 77 (The) 77 SB
255 1950 1809 (display of these backbone 'bonds' is turned on and off by the command paramater the same ) 1810 SB
2065 1950 41 (as) 41 SB
255 2009 74 (the ) 81 SB
336 2009 229 ('wireframe' ) 236 SB
572 2009 219 (command. ) 226 SB
798 2009 90 (The ) 97 SB
895 2009 206 (command ) 213 SB
1108 2009 210 ('backbone ) 217 SB
1325 2009 77 (off' ) 84 SB
1409 2009 113 (turns ) 120 SB
1529 2009 69 (off ) 76 SB
1605 2009 74 (the ) 82 SB
1687 2009 172 (selected ) 180 SB
1867 2009 160 ('bonds', ) 168 SB
2035 2009 71 (and) 71 SB
255 2068 210 ('backbone ) 216 SB
471 2068 71 (on' ) 77 SB
548 2068 56 (or ) 62 SB
610 2068 100 (with ) 106 SB
716 2068 35 (a ) 41 SB
757 2068 162 (number ) 168 SB
925 2068 113 (turns ) 119 SB
1044 2068 111 (them ) 117 SB
1161 2068 76 (on. ) 82 SB
1243 2068 90 (The ) 96 SB
1339 2068 162 (number ) 168 SB
1507 2068 81 (can ) 87 SB
1594 2068 59 (be ) 65 SB
1659 2068 104 (used ) 110 SB
1769 2068 54 (to ) 60 SB
1829 2068 209 (determine ) 216 SB
2045 2068 61 (the) 61 SB
255 2127 170 (cylinder ) 172 SB
427 2127 133 (radius ) 135 SB
562 2127 54 (of ) 56 SB
618 2127 74 (the ) 76 SB
694 2127 295 (representation ) 297 SB
991 2127 49 (in ) 51 SB
1042 2127 125 (either ) 127 SB
1169 2127 211 (Angstrom ) 213 SB
1382 2127 56 (or ) 58 SB
1440 2127 169 (RasMol ) 171 SB
1611 2127 121 (units. ) 124 SB
1735 2127 48 (A ) 51 SB
1786 2127 212 (parameter ) 215 SB
2001 2127 105 (value) 105 SB
255 2186 54 (of ) 56 SB
311 2186 88 (500 ) 90 SB
401 2186 93 (\(2.0 ) 95 SB
496 2186 234 (angstroms\) ) 236 SB
732 2186 56 (or ) 58 SB
790 2186 153 (greater ) 155 SB
945 2186 142 (results ) 145 SB
1090 2186 49 (in ) 52 SB
1142 2186 59 (an ) 62 SB
1204 2186 235 ("Parameter ) 238 SB
1442 2186 118 (value ) 121 SB
1563 2186 80 (too ) 83 SB
1646 2186 131 (large" ) 134 SB
1780 2186 125 (error. ) 128 SB
1908 2186 198 (Backbone) 198 SB
255 2245 1421 (objects may be coloured using the RasMol 'colour backbone' command.) 1421 SB
255 2363 90 (The ) 92 SB
347 2363 181 (reserved ) 183 SB
530 2363 117 (word ) 119 SB
649 2363 218 ('backbone' ) 221 SB
870 2363 44 (is ) 47 SB
917 2363 92 (also ) 95 SB
1012 2363 104 (used ) 107 SB
1119 2363 54 (as ) 57 SB
1176 2363 35 (a ) 38 SB
1214 2363 222 (predefined ) 225 SB
1439 2363 69 (set ) 72 SB
1511 2363 84 (and ) 87 SB
1598 2363 54 (as ) 57 SB
1655 2363 35 (a ) 38 SB
1693 2363 212 (parameter ) 215 SB
1908 2363 54 (to ) 57 SB
1965 2363 74 (the ) 77 SB
2042 2363 64 ('set) 64 SB
255 2422 144 (hbond' ) 151 SB
406 2422 84 (and ) 91 SB
497 2422 77 ('set ) 85 SB
582 2422 158 (ssbond' ) 166 SB
748 2422 238 (commands. ) 246 SB
994 2422 90 (The ) 98 SB
1092 2422 169 (RasMol ) 177 SB
1269 2422 206 (command ) 214 SB
1483 2422 127 ('trace' ) 135 SB
1618 2422 44 (is ) 52 SB
1670 2422 259 (synonymous ) 267 SB
1937 2422 100 (with ) 108 SB
2045 2422 61 (the) 61 SB
255 2481 424 (command 'backbone'.) 424 SB
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255 2725 840 (Syntax:  background ) 840 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
255 2842 90 (The ) 95 SB
350 2842 169 (RasMol ) 174 SB
524 2842 264 ('background' ) 269 SB
793 2842 206 (command ) 211 SB
1004 2842 44 (is ) 50 SB
1054 2842 104 (used ) 110 SB
1164 2842 54 (to ) 60 SB
1224 2842 69 (set ) 75 SB
1299 2842 74 (the ) 80 SB
1379 2842 141 (colour ) 147 SB
1526 2842 54 (of ) 60 SB
1586 2842 74 (the ) 80 SB
1666 2842 186 ("canvas" ) 192 SB
1858 2842 248 (background.) 248 SB
255 2901 90 (The ) 91 SB
346 2901 141 (colour ) 142 SB
488 2901 95 (may ) 96 SB
584 2901 59 (be ) 60 SB
644 2901 120 (given ) 121 SB
765 2901 54 (as ) 55 SB
820 2901 125 (either ) 126 SB
946 2901 35 (a ) 36 SB
982 2901 141 (colour ) 143 SB
1125 2901 118 (name ) 120 SB
1245 2901 56 (or ) 58 SB
1303 2901 35 (a ) 37 SB
1340 2901 157 (comma ) 159 SB
1499 2901 202 (separated ) 204 SB
1703 2901 116 (triple ) 118 SB
1821 2901 54 (of ) 56 SB
1877 2901 106 (Red, ) 108 SB
1985 2901 121 (Green) 121 SB
255 2960 84 (and ) 99 SB
354 2960 105 (Blue ) 120 SB
474 2960 149 (\(RGB\) ) 164 SB
638 2960 253 (components ) 268 SB
906 2960 185 (enclosed ) 200 SB
1106 2960 49 (in ) 64 SB
1170 2960 143 (square ) 158 SB
1328 2960 192 (brackets. ) 207 SB
1535 2960 153 (Typing ) 168 SB
1703 2960 74 (the ) 90 SB
1793 2960 206 (command ) 222 SB
2015 2960 91 ('help) 91 SB
255 3019 168 (colours' ) 169 SB
424 3019 85 (will ) 86 SB
510 3019 96 (give ) 97 SB
607 3019 35 (a ) 36 SB
643 3019 71 (list ) 72 SB
715 3019 54 (of ) 55 SB
770 3019 74 (the ) 75 SB
845 3019 222 (predefined ) 223 SB
1068 3019 141 (colour ) 142 SB
1210 3019 137 (names ) 139 SB
1349 3019 227 (recognised ) 229 SB
1578 3019 60 (by ) 62 SB
1640 3019 182 (RasMol. ) 184 SB
1824 3019 129 (When ) 131 SB
1955 3019 151 (running) 151 SB
255 3078 1807 (under X Windows, RasMol also recognises colours in the X server's colour name database.) 1807 SB
1 #C
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0 0 25 11 798 1100 300 SM
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
0 0 0 fC
255 224 1745 (The 'background' command is synonymous with the RasMol 'set background' command.) 1745 SB
32 0 0 58 58 1 0 0 54 /Times-Bold /font29 ANSIFont font
255 342 170 (Centre) 170 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
255 468 900 (Syntax:  center {}) 900 SB
255 524 900 (         centre {}) 900 SB
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255 641 90 (The ) 95 SB
350 641 169 (RasMol ) 174 SB
524 641 151 ('centre' ) 156 SB
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1127 641 115 (point ) 120 SB
1247 641 125 (about ) 130 SB
1377 641 131 (which ) 136 SB
1513 641 74 (the ) 79 SB
1592 641 146 ('rotate' ) 151 SB
1743 641 206 (command ) 212 SB
1955 641 84 (and ) 90 SB
2045 641 61 (the) 61 SB
255 700 121 (scroll ) 124 SB
379 700 95 (bars ) 98 SB
477 700 130 (rotate ) 133 SB
610 700 74 (the ) 77 SB
687 700 155 (current ) 158 SB
845 700 204 (molecule. ) 207 SB
1052 700 176 (Without ) 180 SB
1232 700 35 (a ) 39 SB
1271 700 212 (parameter ) 216 SB
1487 700 74 (the ) 78 SB
1565 700 135 (centre ) 139 SB
1704 700 206 (command ) 210 SB
1914 700 127 (resets ) 131 SB
2045 700 61 (the) 61 SB
255 759 135 (centre ) 145 SB
400 759 54 (of ) 64 SB
464 759 170 (rotation ) 180 SB
644 759 54 (to ) 64 SB
708 759 59 (be ) 69 SB
777 759 74 (the ) 84 SB
861 759 135 (centre ) 145 SB
1006 759 54 (of ) 64 SB
1070 759 151 (gravity ) 161 SB
1231 759 54 (of ) 64 SB
1295 759 74 (the ) 84 SB
1379 759 204 (molecule. ) 214 SB
1593 759 45 (If ) 55 SB
1648 759 59 (an ) 69 SB
1717 759 113 (atom ) 124 SB
1841 759 223 (expression ) 234 SB
2075 759 31 (is) 31 SB
255 818 200 (specified, ) 211 SB
466 818 169 (RasMol ) 180 SB
646 818 149 (rotates ) 160 SB
806 818 74 (the ) 85 SB
891 818 191 (molecule ) 202 SB
1093 818 125 (about ) 136 SB
1229 818 74 (the ) 85 SB
1314 818 135 (centre ) 146 SB
1460 818 54 (of ) 65 SB
1525 818 151 (gravity ) 163 SB
1688 818 54 (of ) 66 SB
1754 818 74 (the ) 86 SB
1840 818 69 (set ) 81 SB
1921 818 54 (of ) 66 SB
1987 818 119 (atoms) 119 SB
255 877 187 (specified ) 189 SB
444 877 60 (by ) 62 SB
506 877 74 (the ) 76 SB
582 877 236 (expression. ) 238 SB
820 877 152 (Hence, ) 154 SB
974 877 40 (if ) 42 SB
1016 877 35 (a ) 37 SB
1053 877 127 (single ) 129 SB
1182 877 113 (atom ) 116 SB
1298 877 44 (is ) 47 SB
1345 877 187 (specified ) 190 SB
1535 877 60 (by ) 63 SB
1598 877 74 (the ) 77 SB
1675 877 236 (expression, ) 239 SB
1914 877 89 (that ) 92 SB
2006 877 100 (atom) 100 SB
255 936 786 (will remain 'stationary' during rotations.) 786 SB
255 1054 1465 (Type 'help expression' for more information on RasMol atom expressions.) 1465 SB
32 0 0 58 58 1 0 0 54 /Times-Bold /font29 ANSIFont font
255 1172 227 (Clipboad) 227 SB
32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
255 1298 210 (syntax:) 210 SB
555 1298 270 (clipboard) 270 SB
32 0 0 50 50 0 0 0 45 /Times-Roman /font32 ANSIFont font
255 1415 90 (The ) 91 SB
346 1415 169 (RasMol ) 170 SB
516 1415 214 ('clipboard' ) 215 SB
731 1415 206 (command ) 207 SB
938 1415 135 (places ) 136 SB
1074 1415 35 (a ) 36 SB
1110 1415 109 (copy ) 110 SB
1220 1415 54 (of ) 55 SB
1275 1415 74 (the ) 75 SB
1350 1415 190 (currently ) 191 SB
1541 1415 198 (displayed ) 199 SB
1740 1415 131 (image ) 132 SB
1872 1415 63 (on ) 64 SB
1936 1415 74 (the ) 76 SB
2012 1415 94 (local) 94 SB
255 1474 1592 (graphics 'clipboard'. Note this command is not yet supported on UNIX or VMS ) 1593 SB
1848 1474 180 (systems. ) 181 SB
2029 1474 45 (It ) 46 SB
2075 1474 31 (is) 31 SB
255 1533 182 (intended ) 201 SB
456 1533 54 (to ) 73 SB
529 1533 119 (make ) 138 SB
667 1533 225 (transfering ) 244 SB
911 1533 54 (of ) 73 SB
984 1533 150 (images ) 169 SB
1153 1533 178 (between ) 197 SB
1350 1533 249 (applications ) 268 SB
1618 1533 127 (easier ) 146 SB
1764 1533 126 (under ) 146 SB
1910 1533 196 (Microsoft) 196 SB
255 1592 730 (Windows of on an Apple Macintosh.) 730 SB
255 1710 129 (When ) 139 SB
394 1710 118 (using ) 128 SB
522 1710 169 (RasMol ) 179 SB
701 1710 63 (on ) 73 SB
774 1710 35 (a ) 45 SB
819 1710 138 (UNIX ) 148 SB
967 1710 56 (or ) 66 SB
1033 1710 121 (VMS ) 131 SB
1164 1710 148 (system ) 158 SB
1322 1710 83 (this ) 93 SB
1415 1710 260 (functionality ) 271 SB
1686 1710 95 (may ) 106 SB
1792 1710 59 (be ) 70 SB
1862 1710 186 (achieved ) 197 SB
2059 1710 47 (by) 47 SB
255 1769 221 (generating ) 226 SB
481 1769 35 (a ) 40 SB
521 1769 125 (raster ) 131 SB
652 1769 131 (image ) 137 SB
789 1769 49 (in ) 55 SB
844 1769 35 (a ) 41 SB
885 1769 145 (format ) 151 SB
1036 1769 89 (that ) 95 SB
1131 1769 81 (can ) 87 SB
1218 1769 59 (be ) 65 SB
1283 1769 99 (read ) 105 SB
1388 1769 60 (by ) 66 SB
1454 1769 74 (the ) 80 SB
1534 1769 193 (receiving ) 199 SB
1733 1769 182 (program ) 188 SB
1921 1769 118 (using ) 124 SB
2045 1769 61 (the) 61 SB
255 1828 506 (RasMol 'write' command.) 506 SB
32 0 0 58 58 1 0 0 54 /Times-Bold /font29 ANSIFont font
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32 0 0 50 50 0 0 0 41 /Courier-Bold /font9 ANSIFont font
255 2131 1050 (Syntax:  colour {