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      babel-1.6
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     | 
Makefile, 
README.1ST, 
addh.c, 
addh2.c, 
aromatic.c, 
assbnd.c, 
asstypes.c, 
babel.h, 
bblmacs.h, 
bblmast.h, 
bbltyp.h, 
block.c, 
bndord.c, 
bo.c, 
buildct.c, 
combine.c, 
convert.c, 
delatms.c, 
delh2o.c, 
element.lis, 
filesrch.c, 
fileutil.c, 
gastchg.c, 
gauss.hdr, 
htoend.c, 
int2cart.c, 
intcart.c, 
menus.c, 
miniums.c, 
molwt.c, 
new.lis, 
nodummy.c, 
orient.c, 
precip.c, 
printbad.c, 
progress.c, 
psgvb.hdr, 
quanta.lis, 
rdalch.c, 
rdampout.c, 
rdbalst.c, 
rdbgf.c, 
rdboogie.c, 
rdc3d.c, 
rdcacao.c, 
rdcadpac.c, 
rdcharmm.c, 
rdcsd.c, 
rddock.c, 
rddpdb.c, 
rdelmnts.c, 
rdfdat.c, 
rdfeat.c, 
rdfract.c, 
rdg96.c, 
rdgamout.c, 
rdgauout.c, 
rdgzmat.c, 
rdhin.c, 
rdinsite.c, 
rdint.c, 
rdirc.c, 
rdisis.c, 
rdm3d.c, 
rdmacmod.c, 
rdmacmol.c, 
rdmdl.c, 
rdmicro.c, 
rdmm2.c, 
rdmm2in.c, 
rdmm3.c, 
rdmolen.c, 
rdmopac.c, 
rdmopcrt.c, 
rdpcmod.c, 
rdpdb.c, 
rdprep.c, 
rdpsgout.c, 
rdpsgvin.c, 
rdquanta.c, 
rdschak.c, 
rdshelx.c, 
rdsmiles.c, 
rdspart.c, 
rdspmm.c, 
rdspsemi.c, 
rdsybmol.c, 
rdsybyl.c, 
rdtypes.c, 
rdunichm.c, 
rdwiz.c, 
rdxed.c, 
rdxyz.c, 
renum.c, 
report.c, 
rings.c, 
ringutil.c, 
sets.c, 
smilesto.c, 
spline.c, 
strngutl.c, 
tokenst.c, 
tosmiles.c, 
tree.c, 
typbybo.c, 
types.lis, 
umslist.c, 
utils.c, 
vectors.c, 
wralch.c, 
wrbalst.c, 
wrbgf.c, 
wrbmin.c, 
wrbox.c, 
wrc3d.c, 
wrcacao.c, 
wrcache.c, 
wrcacint.c, 
wrchdrw.c, 
wrcontmp.c, 
wrcsr.c, 
wrcssr.c, 
wrdock.c, 
wrdpdb.c, 
wrfeat.c, 
wrfh.c, 
wrg96.c, 
wrgamess.c, 
wrgau.c, 
wrgaucrt.c, 
wrhin.c, 
wricon.c, 
wrint.c, 
wrisis.c, 
wrm3d.c, 
wrmaccs.c, 
wrmacmod.c, 
wrmcmol.c, 
wrmdl.c, 
wrmicro.c, 
wrmimic.c, 
wrmiv.c, 
wrmm2.c, 
wrmm3.c, 
wrmopac.c, 
wrpcmod.c, 
wrpdb.c, 
wrpsgv.c, 
wrpsgvz.c, 
wrsmiles.c, 
wrspart.c, 
wrsybmol.c, 
wrsybyl.c, 
wrtinker.c, 
wrtorlst.c, 
wrunichm.c, 
wrwiz.c, 
wrxed.c, 
wrxyz.c
      | 
     
    
   | 
  
 
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/*****
This file is part of the Babel Program
Copyright (C) 1992-96 W. Patrick Walters and Matthew T. Stahl 
All Rights Reserved 
All Rights Reserved 
All Rights Reserved 
All Rights Reserved 
For more information please contact :
babel@mercury.aichem.arizona.edu
--------------------------------------------------------------------------------
FILE : wrmcmol.c
AUTHOR(S) : Matt Stahl
DATE : 7-93
PURPOSE : Routines to write a MacMolecule file 
******/
#include "bbltyp.h"
static warning wstr;
extern element_type *elements; 
int 
write_mcmol(FILE *file1, ums_type *mol)
{ 
  int i,j,num_types = 0;
  int result,unique;
  double vdw_radius,bs_radius,red,grn,blu;  
  char type_name[5];
  char type_list[80];
  char token[5];
  pdb_type_rec *pdb_types;
  strcpy(OutputKeywords,"BS");
  fprintf(file1,";%s\n",Title);
  fprintf(file1,";Stick color\n");
  fprintf(file1,"2(0.700, 0.700, 0.700)\n");
  fprintf(file1,";Model\n");
  
  if (strcmp(OutputKeywords,"KEYWORDS GO HERE") == 0)
  {
    strcpy(OutputKeywords,"BS");
    sprintf(wstr,"Model type not specified: (default is ball and stick)\n");
    show_warning(wstr);
  }
  fprintf(file1,"%s\n",OutputKeywords);
  strcpy(type_list,"");
  for (i = 1; i <= Atoms; i ++)
  {
    unique = TRUE;
    result = get_output_type(i,"MCML",Type(i),type_name,dummy);    
    for (j = 1;j <= num_types;j++)
    {
      strcpy(token,gettoken(type_list,"/",j));
      if (EQ(type_name,token))
      {
	unique = FALSE;
      }
    }
    if (unique)
    {
      num_types++;
      strcat(type_list,type_name);
      strcat(type_list,"/");
      get_atom_info(Type(i),&vdw_radius,&bs_radius,&red,&grn,&blu);
      
      fprintf(file1,"%s=%5.3f,%5.3f(%5.3f,%5.3f,%5.3f)\n",
	      type_name,
	      vdw_radius,
	      bs_radius,
	      red,
	      grn,
	      blu);
    }
  }
  
  pdb_types = (pdb_type_rec *)malloc((Atoms + 1)* 
				     sizeof(pdb_type_rec));
  for (i = 1; i <= Atoms; i ++)
  {
    result = xlate_std_type("MCML",Type(i),type_name);
    if (result == 0)
    {
      strcpy(type_name,"X");
    }
    strcpy(pdb_types[i].name,type_name);
    assign_pdb_number(pdb_types,i);
    fprintf(file1,"%1s%d:  %7.4f  %7.4f  %7.4f\n",
	    type_name,
	    pdb_types[i].number,
	    X(i),
	    Y(i),
	    Z(i));
  }
  fprintf(file1,";Bonds\n");
  for(i = 0; i < Bonds; i++)
  {
    fprintf(file1,"%s%d,%s%d\n",
	    pdb_types[Start(i)].name,
	    pdb_types[Start(i)].number,
	    pdb_types[End(i)].name,
	    pdb_types[End(i)].number);
    
  }
  return(TRUE);
}
void get_atom_info(char *type_name,double *vdw_radius,double *bs_radius, double *red, double *grn, double *blu)
{
  int i;
  int found;
  char trans_name[5];
 
  xlate_std_type("XYZ",type_name,trans_name);
  found = FALSE;
  for (i = 0; i < MAX_ELEMENTS; i++)
  { 
    if (strncmp(trans_name,elements[i].name,2) == 0) 
    {
      *vdw_radius = elements[i].vdw_rad;
      *bs_radius = elements[i].bs_rad;
      *red = elements[i].red;
	  *grn = elements[i].green;
	  *blu = elements[i].blue;
      found = TRUE;
    }
 
  }
  if (found == FALSE)
    {    
     *vdw_radius = 1.5;
     *bs_radius = 0.75;
     *red = 0.00;
     *grn = 0.00;
     *blu = 0.00;
   }
  
}
void translate_color(int *color,double *red,double *grn,double *blu)
{
  switch(*color)
  {
  case BBL_UNDEF:
    *red = 0.8;*grn = 0.0;*blu = 0.6;
    break;
  case BBL_BLACK:
    *red = 0.0;*grn = 0.0;*blu = 0.0;
    break;
  case BBL_GREY:
    *red = 0.5;*grn = 0.5;*blu = 0.5;
    break;
  case BBL_DKBLU:
    *red = 0.05;*grn = 0.05;*blu = 0.5;
    break;
  case BBL_BLUE:
    *red = 0.0;*grn = 0.0;*blu = 1.0;
    break;
  case BBL_LTBLU:
    *red = 0.1;*grn = 0.4;*blu = 1.0;
    break;
  case BBL_AQUA:
    *red = 0.07;*grn = 0.5;*blu = 0.7;
    break;
  case BBL_TURQ:
    *red = 0.07;*grn = 0.7;*blu = 0.7;
    break;
  case BBL_BLUGRN:
    *red = 0.32;*grn = 0.87;*blu = 0.67;
    break;
  case BBL_DKGRN:
    *red = 0.04;*grn = 0.94;*blu = 0.04;
    break;
  case BBL_GREEN:
    *red = 0.0;*grn = 0.0;*blu = 0.1;
    break;
  case BBL_LTGRN:
    *red = 0.4;*grn = 1.0;*blu = 0.1;
    break;
  case BBL_YELGRN:
    *red = 0.8;*grn = 1.0;*blu = 0.1;
    break;
  case BBL_YELLOW:
    *red = 1.0;*grn = 1.0;*blu = 0.0;
    break;
  case BBL_ORANGE:
    *red = 1.0;*grn = 0.37;*blu = 0.08;
    break;
  case BBL_DKRED:
    *red = 0.7;*grn = 0.0;*blu = 0.1;
    break;
  case BBL_RED:
    *red = 1.0;*grn = 0.0;*blu = 0.0;
    break;
  case BBL_PINK:
    *red = 1.0;*grn = 0.1;*blu = 0.5;
    break;
  case BBL_REDPUR:
    *red = 1.0;*grn = 0.1;*blu = 0.8;
    break;
  case BBL_PURPLE:
    *red = 0.75;*grn = 0.08;*blu = 0.5;
    break;
  case BBL_BLUPUR:
    *red = 0.5;*grn = 0.1;*blu = 0.8;
    break;
  case BBL_WHITE:
    *red = 1.0;*grn = 1.0;*blu = 1.0;
    break;
  }
}
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