chemtex
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README,
appdb.tex,
appdc.tex,
chap3a.tex,
chap4.tex,
chap5.tex,
chap6a.tex,
chap6b.tex,
chap6c.tex,
chap6d.tex,
chemtex.shar,
macros.tex
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\initial
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\newcommand{\ri}{All other argument values cause no action}
\newcommand{\rhq}{An argument of ``Q'' causes no action. \ }
\noindent C. \underline{Macros for Heterocyclic Ring Systems}
\vspace{\len mm}
\indent i. \underline{Macro $\backslash $hetthree[8]}.
\ This macro typesets a 3-membered ring with one hetero atom.
The common ring structures of this type are epoxides (oxirane)
and ethylene imine (aziridine). Ring positions 1, 2, and 3 are
the positions to which ${\rm R^1}$, ${\rm R^2}$, and ${\rm R^3}$
are attached.
\[ \hetthree{${\rm R^1}$}{${\rm R^2}$}{${\rm R^3}$}{${\rm R^4}$}
{Q}{S}{H}{N} \]
\begin{description}
\item[{\rm \ \ \ \ \ \ Arguments 1 -- 5:}] An argument of ``Q''
causes no action. All other argument values are used as
the respective substituent formulas ${\rm R^1}$ -- ${\rm R^5}$.
\item[{\rm \ \ \ \ \ \ Argument 6:}] An argument of ``S'' typesets
a bond to the left of ring atom \#2. An argument of ``H''
puts ---H to the left of ring atom \#2. For all other
argument values, no bond is drawn and ${\rm R^2}$ is moved
next to ring atom \#2.
\item[{\rm \ \ \ \ \ \ Argument 7:}] An argument of ``S'' typesets
a bond to the right of ring atom \#3. An argument of ``H''
puts H--- to the right of ring atom \#3. For all other
argument values, no bond is drawn and ${\rm R^3}$ is
moved next to ring atom \#3.
\item[{\rm \ \ \ \ \ \ Argument 8:}] The atom symbol for the
hetero atom.
\end{description}
\vspace{\len mm}
\indent ii. \underline{Macro $\backslash $hetifive[9]}.
\ This macro typesets 5-membered rings with one hetero atom.
Thus it can be used to print the pyrrole, furan, and
thiophene ring systems, and their hydrogenated versions.
The arguments are selected such that common compounds like
proline, pyrrolidone, maleic anhydride, and vitamin C
can be printed. Ring positions 1, 2, 3, 4, and 5 are the
positions to which ${\rm R^1}$ -- ${\rm R^5}$ are attached.
\[ \hetifive{$R^1$}{$R^2$}{$R^3$}{$R^4$}{$R^5$}{D}{Q}{D}{$N$}
\hspace{3cm}
\hetifive{Q}{O}{Q}{Q}{O}{Q}{D}{Q}{O} \]
\begin{description}
\item[{\rm \ \ \ \ \ \ Arguments 1,3,4:}] An argument of ``Q''
causes no action. All other argument values are used
as the respective substituent formulas ${\rm R^1}$,
${\rm R^3}$, and ${\rm R^4}$.
\item[{\rm \ \ \ \ \ \ Argument 2:}] An argument value of ``Q''
causes no action. An argument value of ``O'' puts an
outside double bond with an O in ring position 2.
All other argument values are used as the substituent
formula ${\rm R^2}$ with a single bond.
\item[{\rm \ \ \ \ \ \ Argument 5:}] An argument value of ``Q''
causes no action. An argument value of ``O'' puts an
outside double bond with an O in ring position 5.
All other argument values are used as the substituent
formula ${\rm R^5}$ with a single bond.
\item[{\rm \ \ \ \ \ \ Argument 6:}] An argument of ``D'' draws
a second bond between ring positions 2 and 3. \ri .
\item[{\rm \ \ \ \ \ \ Argument 7:}] An argument of ``D'' draws
a second bond between ring positions 3 and 4. \ri .
\item[{\rm \ \ \ \ \ \ Argument 8:}] An argument of ``D'' draws
a second bond between ring positions 4 and 5. \ri .
\item[{\rm \ \ \ \ \ \ Argument 9:}] The atomic symbol of the
hetero atom.
\end{description}
\vspace{\len mm}
\indent iii. \underline{Macro $\backslash $heticifive[9]}.
\ This macro typesets a 5-membered ring with 2 hetero atoms
separated by a carbon atom. Thus it can be used to print ring
systems such as imidazole, thiazole, and oxazole. The arguments
were selected by considering actually occurring compounds
containing these ring systems. Ring positions 1, 2, 3, 4, and 5
are the positions to which ${\rm R^1}$ -- ${\rm R^5}$ are
attached.
\[ \heticifive{$R^1$}{$R^2$}{$R^3$}{$R^4$}{$R^5$}{Q}{$R^7$}
{$N$}{$N$} \hspace{3cm}
\heticifive{Q}{O}{Q}{Q}{Q}{Q}{D}{N}{O} \]
\begin{description}
\item[{\rm \ \ \ \ \ \ Arguments 1, 3, 5:}] An argument of ``Q''
causes no action. All other argument values are used as
the respective substituent formulas ${\rm R^1}$, ${\rm R^3}$,
and ${\rm R^5}$.
\item[{\rm \ \ \ \ \ \ Argument 2:}] An argument of ``Q''causes no
action. An argument of ``O'' puts an outside double bond
with an O in ring position 2. All other argument values
are used as the substituent formula ${\rm R^2}$ with
a single bond.
\item[{\rm \ \ \ \ \ \ Argument 4:}] An argument of ``Q''causes
no action. An argument of ``O'' puts an outside double bond
with an O in ring position 4. All other argument values
are used as the substituent formula ${\rm R^4}$ with a
single bond.
\item[{\rm \ \ \ \ \ \ Argument 6:}] An argument of ``D'' draws
a second bond between ring positions 2 and 3. \ri .
\item[{\rm \ \ \ \ Argument 7:}] An argument of ``Q'' causes
no action. An argument of ``D'' draws a second bond
between ring positions 4 and 5. All other argument values
are used as the substituent formula ${\rm R^7}$, the second
substituent at ring position 5.
\item[{\rm \ \ \ \ \ \ Arguments 8 and 9:}] The atomic symbols of the
hetero atoms in position 1 and 3, respectively.
\end{description}
\vspace{\len mm}
\newpage
\indent iv. \underline{Macro $\backslash $pyrazole[8]}.
\ The pyrazole ring is found in a number of drugs, such as
aminopyrine. Ring positions 1, 2, 3, 4, and 5 are the
positions to which ${\rm R^1}$ -- ${\rm R^5}$ are attached.
\yi=200 \pht=750
\[ \pyrazole{$R^1$}{$R^2$}{$R^3$}{$R^4$}{$R^5$}{Q}{D}{Q}
\hspace{3cm}
\pyrazole{$R^1$}{Q}{Q}{Q}{O}{D}{Q}{Q} \]
\reinit
\begin{description}
\item[{\rm \ \ \ \ \ \ Arguments 1, 2, 4:}] An argument of ``Q''
causes no action. All other argument values are used as
the respective substituent formulas ${\rm R^1}$, ${\rm R^2}$,
and ${\rm R^4}$.
\item[{\rm \ \ \ \ \ \ Argument 3:}] An argument of ``Q'' causes
no action. An argument of ``O'' puts an outside double
bond with an O in ring position 3. All other argument
values are used as the substituent formula ${\rm R^3}$
with a single bond.
\item[{\rm \ \ \ \ \ \ Argument 5:}] An argument of ``Q'' causes
no action. An argument of ``O'' puts an outside double
bond with an O in ring position 5. All other argument
values are used as the substituent formula ${\rm R^5}$
with a single bond.
\item[{\rm \ \ \ \ \ \ Arguments 6, 7, 8:}] An argument of ``D''
draws a second bond between ring positions 2 and 3,
ring positions 3 and 4, and ring positions 4 and 5,
respectively. \ri .
\end{description}
\vspace{\len mm}
\indent v. \underline{Macro $\backslash $hetisix[9]}.
\ This macro typesets a six-membered ring with one hetero
atom. Thus it can be used to print ring systems such as
pyridine and pyran. The arguments were selected by
considering actually occurring compounds such as the
B vitamins niacin and pyridoxine and the coumarin ring
system. Ring positions 1 -- 6 are the positions to which
${\rm R^1}$ -- ${\rm R^6}$ are attached.
\[ \hetisix{$R^1$}{$R^2$}{$R^3$}{$R^4$}{$R^5$}{$R^6$}
{D}{D}{$N$}
\hspace{3cm}
\hetisix{Q}{Q}{Q}{Q}{Q}{Q}{$R^7$}{Q}{O} \]
\begin{description}
\item[{\rm \ \ \ \ \ \ Argument 1:}] An argument of ``Q'' causes
no action. An argument of ``D'' prints a second bond
between positions 1 and 6. All other arguments values
are used as the substituent formula ${\rm R^1}$.
\item[{\rm \ \ \ \ \ \ Arguments 2 -- 6:}] An argument of ``Q''
causes no action. All other argument values are used as
the respective substituent formulas ${\rm R^2}$ --
${\rm R^6}$.
\item[{\rm \ \ \ \ \ \ Argument 7:}] An argument of ``Q'' causes
no action. An argument of ``D'' prints a second bond
between positions 2 and 3. All other argument values
cause an outside double bond to be drawn from position
2 and the argument itself to be put at the end of the
double bond as ${\rm R^7}$.
\item[{\rm \ \ \ \ \ \ Argument 8:}] An argument of ``D'' prints
a second bond between positions 4 and 5. \ri .
\item[{\rm \ \ \ \ \ \ Argument 9:}] The atomic symbol of the
hetero atom.
\end{description}
\vspace{\len mm}
\indent vi. \underline{Macro $\backslash $pyrimidine[9]}.
The pyrimidine ring occurs in such important compounds
as cytosine, thymine, uracil, and the barbiturates.
The arguments of the macro were selected such that
these compounds can be typeset. Ring positions 1 -- 6
are the positions to which ${\rm R^1}$ -- ${\rm R^6}$
are attached.
\[ \pyrimidine{$R^1$}{$R^2$}{$R^3$}{$R^4$}{$R^5$}{$R^6$}
{Q}{Q}{D}
\hspace{3cm}
\pyrimidine{$H$}{O}{$H$}{O}{$R^5$}{O}{Q}{$R^8$}{Q} \]
\begin{description}
\item[{\rm \ \ \ \ \ \ Arguments 1, 3, 5:}] An argument of ``Q''
causes no action. All other argument values are used
as the respective substituent formulas ${\rm R^1}$,
${\rm R^3}$, and ${\rm R^5}$.
\item[{\rm \ \ \ \ \ \ Argument 2:}] An argument of ``Q'' causes
no action. An argument of ``O'' causes an outside double
bond with an O to be drawn at position 2. All other
argument values are used as the substituent formula
${\rm R^2}$ with a single bond.
\item[{\rm \ \ \ \ \ \ Argument 4:}] An argument of ``Q'' causes
no action. An argument of ``O'' causes an outside double
bond with an O to be drawn at position 4. All other
argument values are used as the substituent formula
${\rm R^4}$ with a single bond.
\item[{\rm \ \ \ \ \ \ Argument 6:}] An argument of ``Q'' causes
no action. An argument of ``O'' causes an outside double
bond with an O to be drawn at position 6. All other
argument values are used as the substituent formula
${\rm R^6}$ with a single bond.
\item[{\rm \ \ \ \ \ \ Argument 7:}] An argument of ``D''
prints a second bond between positions 1 and 2. \ri .
\item[{\rm \ \ \ \ \ \ Argument 8:}] An argument of ``Q'' causes
no action. An argument of ``D'' prints a second bond
between positions 3 and 4. All other argument values
are used as the second substituent in position 5,
${\rm R^8}$.
\item[{\rm \ \ \ \ \ \ Argument 9:}] An argument of ``D''
prints a second bond between positions 5 and 6. \ri .
\end{description}
\vspace{\len mm}
\indent vii. \underline{Macro $\backslash $pyranose[9]}.
\ This macro was developed specifically for monosaccharide
structures. Carbon \#1 is at the position to which
${\rm R^1}$ is attached. Structures from this macro look
best with substituent formulas in 10 point size (shown)
or even smaller.
\[ \pyranose{$R^1$}{$R^2$}{$R^3$}{$R^4$}{$R^5$}{$R^6$}
{$R^7$}{$R^8$}{$R^9$} \]
Arguments 1 -- 9 are used as the respective substituent
formulas ${\rm R^1}$ -- ${\rm R^9}$. \rhq
\vspace{\len mm}
\indent viii. \underline{Macro $\backslash $furanose[8]}.
\ This macro was also developed specifically for
monosaccharide structures. Carbon \#1 is at the position
to which ${\rm R^1}$ is attached. Structures look best
with substituent formulas in 10 point size (shown)
or even smaller.
\[ \furanose{$R^1$}{$R^2$}{$R^3$}{$R^4$}{$R^5$}{$R^6$}
{$R^7$}{$R^8$} \]
\begin{description}
\item[{\rm \ \ \ \ \ \ Argument 1:}] \rhq An argument of ``N''
prints a long vertical bond at position 1,
used for attachment to
purine and pyrimidine bases to form nucleosides.
All other argument values are used as the substituent
formula ${\rm R^1}$.
\item[{\rm \ \ \ \ \ \ Arguments 2 -- 8}] \rhq All other
argument values are used as the respective substituent
formulas ${\rm R^2}$ -- ${\rm R^8}$.
\end{description}
\vspace{\len mm}
\indent ix. \underline{Macro $\backslash $purine[9]}.
\ The purine ring system occurs in such important compounds
as adenine, guanine, caffeine, and uric acid. The arguments
of the macro were selected such that these compounds can
be typeset. Positions 1, 2, 3, 6, 7, 8, and 9 are indicated
in the following diagram by the respective substituent
formulas.
\[ \purine{$R^1$}{$R^2$}{$R^3$}{Q}{$R^6$}{Q}{$R^7$}
{$R^8$}{$R^9$} \]
\begin{description}
\item[{\rm \ \ \ \ \ \ Arguments 1, 3, 6, 7, 9:}] \rhq
All other argument values are used as the respective
substituent formulas ${\rm R^1}$ $\ldots$ ${\rm R^9}$.
\item[{\rm \ \ \ \ \ \ Argument 2:}] An argument of ``D'' prints
a second bond between positions 2 and 3. All other
argument values cause an outside double bond to be
printed at position 2 and the argument itself to be put
at the end of the double bond as the substituent formula
${\rm R^2}$.
\item[{\rm \ \ \ \ \ \ Argument 4:}] An argument of ``D'' prints
a second bond between positions 1 and 6. \ri .
\item[{\rm \ \ \ \ \ \ Argument 5:}] \rhq . All other argument
values cause an outside double bond to be printed at
position 6 and the argument itself to be put at the end
of the double bond as the substituent formula
${\rm R^6}$.
\item[{\rm \ \ \ \ \ \ Argument 8:}] An argument of ``D'' prints
a second bond between positions 7 and 8. All other
argument values cause an outside double bond to be
printed at position 8 and the argument itself to be put
at the end of the double bond as the substituent
formula ${\rm R^8}$.
\end{description}
\end{document}
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