info-on-software
|
AVS.info,
AVS.note,
Beilstein.note,
C++_copiler,
ChemDesign.note,
ChemInnovation.note,
ChemWeb.note,
ChenSymphony.note,
GAMESS.note,
Gaussian.note,
HINT.note,
HSC.note,
Hypercube-ab-initio,
Hypercube-sgi,
MOE.note,
MacSpartan.note,
NAB.info,
README,
SCULPT.note,
ZINDO.note,
accumodel.note,
adf,
aimpas.note,
amber.note,
ampac-demo-form,
ampac.note,
cameo.note,
camp-atami.note,
chem-spellchecker,
crystallographica,
daylight.note,
gaussian.note,
hyper.note,
hypercube.note,
interchem.note,
interprobe.note,
macromodel.note,
menu,
microsimulations.note,
mol2mol.note,
molecular_graphics_packages,
molscript.note,
moviemol.note,
pharmacokinetics.software,
q-chem,
semichem.note,
sibiq.note,
softek.info,
spartan-wavefunct.note,
unichem.note,
winmgh.note,
|
|
|
From ??? (at) ??? Tue Oct 9 14:00:00 1993
Date: 30 Mar 94 21:45:03 PST
From: vdvk (at) netcom.com (Didier J. Vanderveken)
Subject: Molecular Graphics Packages
This is a list of molecular graphics packages.
Thanks to those who replied to my query.
The format of the database is like a mailbox.
You can read it with your email program.
The list is far to be complete. If you wish to add a new entry
or to complete an existing one, please send me the attached form.
I would like to limit my job to the merging of all emails.
Anonymous posting will not be accepted and your email
address will appear in the database.
The subject line should be the type of computer (UNIX, PC, Mac) and
the name of the program, like: UNIX MyProgram
Feel free to remove a line or to duplicate a line. Each line must start
with one of the defined keyword. Don't use tabs.
If you would like to see more keywords,
send me a separate email.
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Program_Name:
Program_Version: latest version available
Program_Date: date of the latest version
Topic: simple_molecule, drug, crystal, polymer, protein, inorganic, ...
Bibliographic_Ref: If you published an article about your program
Input_Format: PDB, CSD, ORTEP, XYZ, MOPAC, ...
Output_Format: PDB, CSD, ORTEP, XYZ, ...
Molecular_Model: wire, stick, stick_and_ball, CPK, ribbon, alpha_trace, ...
Output_Type: display, PostScript, HPGL, PICT, GIF, ...
Operating_System: Unix, Mac, MSDOS, Windows, ...
Computer_Type: IBM RS/6000, SGI Indigo, ...
Hardware_Requested: dials, coprocessor, ...
Hardware_Supported: stereo_display, special input devices, ...
Graphic_Library: GL, PHIGS, X11, ...
Distribution_Method: public_domain, freeware, shareware, commercial, ...
Ftp_Site:
Ftp_Directory:
Price_Academic:
Price_Private:
Contact_Affiliation:
Contact_Name:
Contact_Phone: +1-234-567-8901 (international number of the headquarters)
Contact_Fax:
Contact_Email:
--------------------------------------------------------------------------
The easiest way to view the list of molecular graphics packages is to use gopher:
gopher www.ccl.net
Choose Other OSC Gophers, then Chemistry, then documents, and then
molecular_graphics_packages.
Since the file conforms to the UNIX mailbox format, you can view it
by Subjects.
You can also retrieve the whole file via ftp:
ftp www.ccl.net
Name: anonymous
Password: Your_True_E-mail_Address
ftp> cd pub/chemistry/documents
ftp> get molecular_graphics_packages
ftp> quit
For people without ftp access, you can still get it via e-mail.
If you want to preserve the mailbox format, you need to uuencode it
(i.e., use the command: get molecular_graphics_packages | uuencode)
since the email will change every From ??? (at) ??? line to >From ??? (at) ???.
You can also use the editor to clean this up. So, if you want to get this
via e-mail send the message:
select chemistry
size 60kb
cd documents
ls
get molecular_graphics_packages
quit
--------------------------------------------------------------------------
From ??? (at) ??? Sun Oct 03 17:06:42 1993
From: "William T. Winter"
Subject: Mac PC ALCHEMY III
Program_Name: ALCHEMY III
Program_Version: III
Program_Date: 3/92
Topic: simple_molecule, drug, crystal, polymer, protein, inorganic, ...
Input_Format: PDB, XYZ, SYBYL, MM2, ...
Output_Format: PDB, MM2, XYZ, SYBYL...
Molecular_Model: wire, stick, stick_and_ball, CPK,
Output_Type: display, HPGL
Operating_System: Mac, MSDOS
Computer_Type: 86 or higher PC with VGA graphics - Macintosh
Hardware_Requested: coprocessor
Distribution_Method: commercial
Price_Academic: 495
Price_Private: ~1000.
Contact_Affiliation: Tripos Associates, 1699 S. Hanley Rd St Louis MO 63144
Contact_Phone: +1-314-647-1099
From ??? (at) ??? Wed Sep 29 10:58:08 1993
Date: Wed, 29 Sep 1993 12:27:29 -0500 (CDT)
From: AHOLDER (at) VAX1.UMKC.EDU
Subject: Unix/VMS AMPAC with Graphical User Interface
Program_Name: AMPAC with Graphical User Interface
Program_Version: 4.5
Program_Date: April, 1993
Topic: Semiempirical Quantum mechanical methods
Input_Format: MOPAC, AMPAC, cartesian
Output_Format: MOPAC, AMPAC
Molecular_Model: wire, ball_and_stick
Output_Type: display,
Operating_System: Unix, VMS
Computer_Type: IBM RS/6000, SGI, VAX, DECStation, Alpha AXP, Convex, Cray, HP
Hardware_Requested: 32MB of memory, 10 MB disk space
Graphic_Library: X11
Distribution_Method: Commercial
Price_Academic: $800
Price_Private: Call
Contact_Affiliation: President, Semichem / Prof., U. of Missouri-KC
Contact_Name: Andy Holder
Contact_Phone: (913)268-3271
Contact_Fax: (913)268-3445
Contact_Email: aholder (at) vax1.umkc.edu
From ??? (at) ??? Mon Nov 08 08:29:29 1993
From: rudy (at) utirc.utoronto.ca (Rudy Ziegler)
Subject: Unix ATOMTV
Date: Mon, 8 Nov 1993 10:12:21 -0500 (EST)
Program_Name: atomtv
Program_Version: 1.1
Program_Date: November 1993
Topic: atomic trajectories
Input_Format: cartesian coordinates
Molecular_Model: shaded spheres
Output_Type: display, sgi rgb images, rayshade scene description
Operating_System: Irix
Computer_Type: SGI (tested on Indigo^2 Extreme and 4D70GT, should run on others)Graphic_Library: GL
Distribution_Method: public_domain
Ftp_Site: ftp.utirc.utoronto.ca
Ftp_Directory: pub/atomtv
Contact_Affiliation: University of Toronto Instructional and Research Computing
Contact_Name: Rudy Ziegler
Contact_Email: rudy (at) utirc.utoronto.ca
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Date: Thu, 11 Nov 1993 13:03:58 -0700 (MST)
From: Pat Walters
Subject: Unix PC Mac BABEL
Remark from the editor : THIS IS NOT a molecular GRAPHICS package
Remark from the editor : but it seems to be interesting and is free
Program_Name: BABEL
Program_Version: 1.0
Program_Date: 8-93
Topic: file conversion
Bibliographic_Ref: Shah, A.V., Walters, W.P., Shah, R., and Dolata,
Bibliographic_Ref: D.P., "Babel a Tool for Converting Between Molecular
Bibliographic_Ref: Data Formats", Computerized Chemical Data Standards :
Bibliographic_Ref: Databases, Data Interchange, and Information Systems,
Bibliographic_Ref: ASTM STP 1214, Rich Lysakowski and Charles E. Gragg, Eds.
Bibliographic_Ref: American Society for Testing and Materials, Philadelphia,
Bibliographic_Ref: 1994.
Input_Format: Mopac Cartesian Mopac Internal Mopac Output
Input_Format: CSD GSTAT CSD CSSR Free Form Fractional
Input_Format: Macromodel MM2 Output PDB
Input_Format: Alchemy XYZ Mac Molecule
Input_Format: Chem3D MicroWorld Ball and Stick
Input_Format: MOLIN
Output_Format: Mopac Cartesian Mopac Internal Gaussian Input
Output_Format: IDATM Macromodel Mac Molecule
Output_Format: MM2 Input MM2 Ouput PDB file
Output_Format: Report of interatiomic distances, angles, and torsions
Output_Format: Alchemy XYZ Ball and Stick
Output_Format: Chem3D MicroWorld
Molecular_Model:
Output_Type:
Operating_System: Unix (AIX, Ultrix, Sun-OS, Convex, SGI, Cray, Linux), MS-DOS
Operating_System: Macs running at least System 7.0
Computer_Type:
Hardware_Requested:
Hardware_Supported:
Graphic_Library:
Distribution_Method: freeware
Ftp_Site: joplin.biosci.arizona.edu
Ftp_Directory: pub/Babel
Price_Academic: FREE
Price_Private: FREE
Contact_Affiliation: Dept. of Chemistry University of Arizona
Contact_Name: Pat Walters
Contact_Phone:
Contact_Fax:
Contact_Email: babel (at) mercury.aichem.arizona.edu
From ??? (at) ??? Wed Sep 29 02:59:31 1993
Date: Wed, 29 Sep 1993 08:56:47 +0100
From: NMUELLER (at) EDVZ.UNI-LINZ.AC.AT (Norbert Mueller)
Subject: Mac BALL & STICK
Program_Name: Ball & Stick
Program_Version: 3.5.1
Program_Date: 06-93
Topic: organic, drug, crystal, protein, inorganic, publication
Input_Format: PDB, CSD, XYZ, MOPAC, MOLFILE, MM2, SHELX, MOLDAT, CHEM3D,
CHEMDRAW
Input_Format: CHEMINTOSH, MACMOLECULE; (automatic format recognition!)
Output_Format: PDB, XYZ, MOPAC, MOLFILE, MM2, MOLDAT, CHEM3D
Molecular_Model: wire, stick, stick_and_ball, CPK, dotted spheres,
simplified CPK
Output_Type: display, PICT, PostScript (with LaserWriter driver), PICS,
QuickTime
Operating_System: Mac (6.7 or 7.x), A/UX
Computer_Type: Macintosh Plus or better
Hardware_Supported: math-coprocessor, large screens, multiple screens,
color printers
Graphic_Library: QuickDraw
Distribution_Method: commercial
Ftp_Site: DEMO: sumex-aim.stanford.edu
Ftp_Directory: DEMO: info-mac/demo
Price_Academic: US$ 255.00 (volume discounts available)
Price_Private: US$ 299.00
Contact_Affiliation: Cherwell Scientific Publ., 15 Auburn Pl., Brookline MA
02146
Contact_Phone: +44 865 784 800 (international number of the headquarters)
Contact_Fax: +44 865 784 801 (international number of the headquarters)
Contact_Phone: (617) 277 4200
Contact_Fax: (617) 739 4836
Contact_Email: Cherwell (at) AppleLink.apple.com
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: Mac Catalyst
Program_Name: Catalyst
Program_Version:
Program_Date:
Topic:
Bibliographic_Ref: MacWorld Feb 1993, p 123
Input_Format:
Output_Format:
Molecular_Model:
Output_Type:
Operating_System: Mac
Computer_Type: Macintosh
Hardware_Requested:
Hardware_Supported:
Graphic_Library:
Distribution_Method:
Ftp_Site:
Ftp_Directory:
Price_Academic:
Price_Private:
Contact_Affiliation: BioCAD
Contact_Name: Valerie Lambert
Contact_Phone:
Contact_Fax:+1-415-903-3900
Contact_Email:
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: PC CHEMVISION
Program_Name: ChemVision
Program_Version:
Program_Date:
Topic:
Bibliographic_Ref:
Input_Format:
Output_Format:
Molecular_Model:
Output_Type:
Operating_System: Windows 3.0
Computer_Type: PC
Hardware_Requested:
Hardware_Supported:
Graphic_Library:
Distribution_Method:
Ftp_Site:
Ftp_Directory:
Price_Academic:
Price_Private:
Contact_Affiliation: Molecular Arts Corporation
Contact_Name:
Contact_Phone: +1-714-634-8100
Contact_Fax: 1-714-634-1999
Contact_Email:
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: Mac PC CHEM-X
Program_Name: Chem-X
Program_Version:
Program_Date:
Topic:
Bibliographic_Ref:
Input_Format:
Output_Format:
Molecular_Model:
Output_Type:
Operating_System:
Computer_Type:
Hardware_Requested:
Hardware_Supported:
Graphic_Library:
Distribution_Method:
Ftp_Site:
Ftp_Directory:
Price_Academic:
Price_Private:
Contact_Affiliation: Chemical Design Inc.
Contact_Name:
Contact_Phone: +1-201-529-3323
Contact_Fax: +1-201-529-2443
Contact_Email:
From ??? (at) ??? Tue Sep 28 09:00:14 1993
Date: Tue, 28 Sep 1993 11:56:55 +0000
From: Joel Wolff
Subject: Mac CSC_CHEM3D_PLUS
Program_Name: CSC_Chem3D_Plus
Program_Version: 3.1.1
Program_Date: February 4, 1993
Topic: organic, protein, inorganic, polymer
Bibliographic_Ref: None
Input_Format: Alchemy, Cartesian_Coordinate (XYZ, fractional_coordinates), CSD,
Connection_Table, Internal_Coordinates, MacroModel, MDL_Molfile, MOPAC, PDB,
SMD, SYBYL, Molecular_Simulations_Molfile.
Output_Format: Alchemy, Cartesian_Coordinate (XYZ, fractional_coordinates),
CSD, Connection_Table, Internal_Coordinates, MacroModel, MDL Molfile, MOPAC,
PDB, SMD, SYBYL, Molecular_Simulations_Molfile, ROSDAL.
Molecular_Model: wire, ball_and_stick, cylindrical_bonds, space_filling
Output_Type: display, PostScript, PICT, PICS, EPS, QuickTime
Operating_System: Macintosh_6.0.5_or_greater
Computer_Type: Macintosh
Hardware_Requested: math coprocessor needed for MM2 and molecular dynamics
calculations
Hardware_Supported:
Graphic_Library:
Distribution_Method: commercial
Ftp_Site:
Ftp_Directory:
Price_Academic: $595 (Quantity discounts available)
Price_Private: $995 (Quantity discounts available)
Contact_Affiliation: Cambridge Scientific Computing
Contact_Name: David Auerbach
Contact_Phone: 1-617-491-6862
Contact_Fax: 1-617-491-8208
Contact_Email: info (at) camsci.com
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: Unix FLEX
Program_Name:
Program_Version:
Program_Date:
Topic:
Bibliographic_Ref:
Input_Format:
Output_Format:
Molecular_Model:
Output_Type:
Operating_System:
Computer_Type: Sun, DEC, and Stardent
Hardware_Requested:
Hardware_Supported:
Graphic_Library:
Distribution_Method:
Ftp_Site: perutz.scripps.edu [137.131.152.27]
Ftp_Directory: pub/flex
Price_Academic:
Price_Private:
Contact_Affiliation: The Scripps Research Institute, La Jolla, CA
Contact_Name: Michael Pique
Contact_Phone:
Contact_Fax:
Contact_Email:
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: FRODO
Program_Name: Frodo
Program_Version:
Program_Date:
Topic: proteins
Bibliographic_Ref:
Input_Format:
Output_Format:
Molecular_Model:
Output_Type:
Operating_System:
Computer_Type:
Hardware_Requested:
Hardware_Supported:
Graphic_Library:
Distribution_Method:
Ftp_Site:
Ftp_Directory:
Price_Academic:
Price_Private:
Contact_Affiliation:
Contact_Name:
Contact_Phone:
Contact_Fax:
Contact_Email:
From ??? (at) ??? Sat Oct 30 14:00:00 1993
From: slee (at) hyper.com (Thomas Slee)
Subject: PC HYPERCHEM Release 3
Date: Fri, 12 Nov 1993 09:45:30 -0500
Program_Name: HyperChem
Program_Version: 3
Program_Date: March 1993
Topic: simple_molecule, drug, protein, inorganic, ...
Bibliographic_Ref: None, but several reviews if you are interested.
Input_Format: PDB, MOPAC, HyperChem Input (HIN), MDL MOL, ISIS Sketch, Tripos Sybyl
Output_Format: PDB, MOPAC, HyperChem Input (HIN), MDL MOL, ISIS Sketch, Tripos Sybyl
Molecular_Model: wire, stick, CPK, ribbon
Output_Type: display, metafile(WMF), bitmap (BMP), all Windows printer drivers
includes postscript, HP, etc.)
Operating_System: Windows, ...
Computer_Type: PC
Hardware_Requested: 386 or higher coprocessor, 4Mb RAM, 10 MB hard disk, VGA or higher display.
Graphics Library: none
Distribution_Method: commercial
Ftp_Site: none
Ftp_Directory:none
Price_Academic: $1200 (suggested) US
Price_Private: $2500 (suggested) US
Contact_Affiliation: Autodesk, Inc.
Contact_Name: none
Contact_Phone: 1-800-424-9737 (N. America), Switzerland 41-38-337637 (Europe)
Contact_Fax: 415-331-8093 (N. AMerica) 41-38-338815 (Europe)
Contact_Email: hyperchem-request (at) autodesk.com
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Date: Tue, 1 Mar 94 21:49:48 -0800
From: clive (at) biosym.com (Clive Freeman)
Subject: SGI IBM RS/6000 INSIGHT II
Program_Name: Insight II
Program_Version: 2.3.0
Program_Date: December 1993
Topic: Simple_Molecule, Drug, Crystal, Polymer, Protein, Inorganic, Biopolymer
Topic: Molecular Mechanics, Semi Empirical Quantum Mechanics, ab initio Quantum Mechanics
Topic: Molecular Dynamics, Model Building, Crystallography, Solvation,
Topic: NMR Analysis & Refinement, Sample Characterization, Powder Diffraction,
Topic: Single Crystal Diffraction, Fiber Diffraction, 29Si NMR, EXAFS Simulation,
Topic: Rietveld Refinement, Model Building, IR Simulation
Topic: Crystallite Morphology, Born Model Calculation, Reaction Kinetics
Topic: 2d-3d Database Conversion, Small Molecule Analysis, Structure Activity Relationships
Topic: Protein Homology Modelling, Receptor Site Analysis, Open Interface
Input_Format: PDB, CSD, XYZ, MOPAC, BIOSYM, MDL, SYBIL MOL2, USER DEFINED
Output_Format: PDB, CSD, XYZ, MOPAC, SYBIL MOL2, MDL, USER DEFINED
Molecular_Model: wire, stick, stick_and_ball, CPK, ribbon, alpha_trace, generalized polyhedra
Output_Type: display, PostScript, HPGL, PICT, Encapsulated PostScript
Operating_System: Unix
Computer_Type: IBM RS/6000, SGI
Hardware_Requested: flexible
Hardware_Supported: stereo_display, dials
Graphic_Library: GL, X11
Distribution_Method: commercial
Ftp_Site: no
Ftp_Directory: no
Price_Academic: configuration dependent
Price_Private: configuration dependent
Contact_Affiliation: BIOSYM's Catalysis and Sorption Project
Contact_Name: Clive Freeman
Contact_Phone: +1-619-458-9990 (international number of the headquarters)
Contact_Fax: +1-619-458-0136
Contact_Email: clive (at) biosym.com
From ??? (at) ??? Tue Sep 28 08:38:53 1993
Date: Tue, 22 Feb 94 12:24 GMT
From: "CBAS25 ::P_BLADON ::CBAS25"
Subject: SGI INTERCHEM
Program_Name: INTERCHEM
Program_Version: Version 5.8
Program_Date: February 1994
Topic: simple_molecule, drug, crystal, protein, nucleic acid, inorganic
Bibliographic_Ref: QCPE_Bulletin, Volume_13,1993,p.1
Input_Format: PDB, CSD, XYZ, MOPAC, Gamess-UK, Interchem,
Input_Format: Sybyl, Insight, MDL-mol
Input_Format: Structure_building, Protein_Sequence
Output_Format: PDB, CSD, XYZ, MOPAC, Gamess-UK, Interchem, Sybyl, Insight
Molecular_Model: wire, stick, stick_and_ball, CPK, ribbon, alpha_trace,
Molecular_Model: Red_Green_Stereo_options
Output_Type: display, SGI-rgb
Operating_System: Unix (Irix 4.0.x)
Computer_Type: SGI-4D20/25/35, SGI-Indigo, SGI-Indigo-2, SGI-Indy
Hardware_Requested: Screen_resolution_1280x1024
Graphic_Library: GL
Distribution_Method: via QCPE or from Peter Bladon
Price_Academic: $400
Price_Private: $2000
Contact_Affiliation: University_of_Strathclyde, Glasgow, Scotland, G66 4HX
Contact_Name: Peter Bladon
Contact_Phone: +44-41-776-1718
Contact_Fax: +44-41-776-1718
Contact_Email: cbas25 (at) uk.ac.strathclyde.vaxa
From ??? (at) ??? Tue Nov 09 12:09:57 1993
From: hilary (at) california.sandia.gov (Hilary Jones)
Subject: Mac MACATOMS 3.3.0
Date: Tue, 9 Nov 1993 11:11:45 -0800 (PST)
Program_Name: MacAtoms
Program_Version: 3.3.0
Program_Date: 10/24/93
Topic: solids, crystals, molecules ....
Bibliographic_Ref:
Input_Format: MacAtoms (x,y,z)
Output_Format: MacAtoms (x,y,z)
Molecular_Model: ball sans stick
Output_Type: display, PostScript, PICT
Operating_System: Mac (System 4.1 or later)
Computer_Type: Macintosh
Hardware_Requested: none
Hardware_Supported: All models of Macintosh
Graphic_Library: QuickDraw (preferably color QuickDraw)
Distribution_Method: freeware
Ftp_Site: none
Ftp_Directory: none
Price_Academic: free
Price_Private: free
Contact_Affiliation: Sandia National Labs, California
Contact_Name: Hilary D. Jones
Contact_Phone: (510) 294-2892, (510) 837-8958
Contact_Fax: (510) 294-1225
Contact_Email: hilary (at) ca.sandia.gov
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: Mac MACMAGE
Program_Name:
Program_Version:
Program_Date:
Topic:
Bibliographic_Ref:
Input_Format:
Output_Format:
Molecular_Model:
Output_Type:
Operating_System:
Computer_Type:
Hardware_Requested:
Hardware_Supported:
Graphic_Library:
Distribution_Method:
Ftp_Site:
Ftp_Directory:
Price_Academic:
Price_Private:
Contact_Affiliation:
Contact_Name:
Contact_Phone:
Contact_Fax:
Contact_Email:
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: Mac MACMIMIC
Program_Name:MacMimic
Program_Version:
Program_Date:
Topic:
Bibliographic_Ref:
Input_Format:
Output_Format:
Molecular_Model:
Output_Type:
Operating_System:
Computer_Type:
Hardware_Requested:
Hardware_Supported:
Graphic_Library:
Distribution_Method:
Ftp_Site:
Ftp_Directory:
Price_Academic:
Price_Private:
Contact_Affiliation: Instar, Ideon, Lund, Sweden S220-00
Contact_Name:
Contact_Phone:
Contact_Fax:
Contact_Email:
From ??? (at) ??? Fri Oct 29 17:41:27 1993
Date: Fri, 29 Oct 1993 15:51:37 CST
Subject: Mac MACMOLECULE
Program_Name: MacMolecule
Operating_System: Mac
Computer_Type: Macintosh
Contact_Affiliation: Univ of Arizona
From ??? (at) ??? Fri Oct 29 17:41:27 1993
Date: Fri, 29 Oct 1993 15:51:37 CST
Subject: Mac MACORTEP
Program_Name: MacORTEP
Operating_System: Mac
Computer_Type: Macintosh
Contact_Affiliation: Univ of Paris val de Marne
Price_Academic: Free
From ??? (at) ??? Mon Nov 08 11:27:52 1993
From: shenkin (at) still3.chem.columbia.edu (Peter Shenkin)
Subject: SGI IBM RS/6000 MACROMODEL
Program_Name: MacroModel
Program_Version: 4.0
Program_Date: July 1993 (annual updates)
Topic: simple_molecule, drug, protein, polynucleotide
Bibliographic_Ref: F. Mohamadi et al, J. Comput. Chem., 11, 440 (1990)
Input_Format: macromodel, PDB
Output_Format: PDB, macromodel
Molecular_Model: wire, stick_and_ball, polytube, CPK, alpha_trace, ...
Output_Type: display, PostScript
Operating_System: Unix (IRIX, AIX)
Computer_Type: IBM RS/6000, SGI, (Cray, Convex for back-end)
Hardware_Requested:
Hardware_Supported: SGI: all graphics boards, hardwarestereo; IBM: sabine & gt4x
Graphic_Library: X/Motif (local or remote); GL (local); DGL (remote, SGI only)
Distribution_Method: academic through Columbia, commercial through DCG
Ftp_Site:
Ftp_Directory:
Price_Academic: $US 750
Price_Private: Sliding scale; inquire Distr. Chem. Graphics, (215)885-3706
Contact_Affiliation: Columbia University
Contact_Name: Ms. Joan Q. Horgan
Contact_Phone: (212) 854-8665
Contact_Fax: (212) 854-5429 or 678-9039
Contact_Email: technical: mmod (at) still3.chem.columbia.edu; ordering: sl1joan (at) still3.chem.columbia.edu
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: Unix MIDASPLUS
From: pett (at) cgl.ucsf.EDU
Date: Thu, 24 Feb 94 11:34:44 -0800
Subject: Unix MidasPlus
Program_Name: MidasPlus - Molecular Interactive Display and Simulation
Topic: proteins, nucleic acids, drugs
Bibliographic_Ref: T.E. Ferrin, C.C. Huang, L.E. Jarvis and R. Langridge,
Bibliographic_Ref: "The MIDAS display system", Journal of Molecular Graphics,
Bibliographic_Ref: Vol 6, No 1, pp 13-27 (1988).
Bibliographic_Ref: C.C. Huang, E.F. Pettersen, T.E. Klein, T.E. Ferrin and R.
Langridge,
Bibliographic_Ref: "Conic: A fast renderer for space-filling molecules with
shadows",
Bibliographic_Ref: Journal of Molecular Graphics, Vol 9, No 4, pp 230-236
(1991).
Bibliographic_Ref: T.E. Ferrin, G.S. Couch, C.C. Huang, E.F. Pettersen and R.
Langridge,
Bibliographic_Ref: "An Affordable Approach to Interactive Desktop Molecular
Modeling",
Bibliographic_Ref: Journal of Molecular Graphics, Vol 9, No 1, pp 27-32,37-38
(1991).
Input_Format: PDB
Output_Format: PDB
Molecular_Model: wire, stick, stick_and_ball, CPK, ribbon
Output_Type: display, PostScript, SGI "Image File"
Operating_System: Unix
Computer_Type: SGI (all models), DECstation 5000, DEC Alpha, NeXTstation
Hardware_Supported: crystal eyes, spaceball
Graphic_Library: GL, OpenGL, or NextStep
Distribution_Method: Licensed through the Regents of the University of
California
Price_Academic: $350
Price_Private: contact
Contact_Affiliation: Computer Graphics Laboratory
Contact_Affiliation: University of California, San Francisco
Contact_Name: MidasPlus distribution coordinator
Contact_Phone: 415-476-5128
Contact_Fax: 415-476-0866
Contact_Email: midasplus (at) cgl.ucsf.edu
From ??? (at) ??? Wed Sep 29 12:57:55 1993
Date: 29 Sep 93 14:37:37 EDT
From: "100012.1163 (at) compuserve.com" <100012.1163 (at) CompuServe.COM>
Subject: PC MOBY
Program_Name: MOBY -Molecular Modelling on the PC
Program_Version: 1.5
Program_Date: June 1993
Topic: Quantum_Chemistry, Molecular_Dynamics, Protein,
Topic: Organic_Molecules
Bibliographic_Ref:
Input_Format: PDB, CSD, MACCS, MOPAC, SCHAKAL, FREE_FORMAT,
Input_Format: GAUSSIAN, Internal, Z_Matrix
Output_Format: Cartesian, Internal, MOPAC
Molecular_Model: wire, stick, stick_and_ball, Van_der_Waals,
Molecular_Model: Potential_Surface, HMO
Output_Type: display, Screen_dump,
PostScript_converter_available
Operating_System: MSDOS, (Windows)
Computer_Type: 386/387, 486
Hardware_Requested: coprocessor, mouse
Hardware_Supported:
Graphic_Library:
Distribution_Method: commercial
Ftp_Site: TRICK.NTP.SPRINGER.DE [192.129.24.12]
Ftp_Site: for interactive demo
Ftp_Directory: /SOFTWARE
Price_Academic: ask
Price_Private: 50% discount
Contact_Affiliation: Springer-Verlag Heidelberg
Contact_Name: Dr. Rainer Stumpe
Contact_Phone: +49-6221-487310
Contact_Fax: +49-6221-487366
Contact_Email: stumpe (at) spint.compuserve.com
From ??? (at) ??? Mon Sep 27 19:02:03 1993
Date: Mon, 27 Sep 93 19:56:39 CDT
From: Carlos Simmerling
Subject: Unix MOIL-VIEW
Program_Name: MOIL-View
Program_Version: 7
Program_Date: September_15_1993
Topic: Protein, user_definable_parameters
Input_Format: PDB,CRD
Molecular_Model: wire, sphere, ribbon, any_combination
Output_Type: display, Postscript
Operating_System: Unix
Computer_Type: IBM RS/6000, SGI
Graphic_Library: GL
Distribution_Method: public_domain
Ftp_Site: 128.248.186.70
Ftp_Directory: dist
Contact_Name: Carlos_Simmerling
Contact_Affiliation: University_of_IL_at_Chicago
Contact_Phone: 1-312-996-4737
Contact_Fax: 1-312-996-0431
Contact_Email: carlos (at) pap.chem.uic.edu
From ??? (at) ??? Fri Oct 29 17:41:27 1993
Date: Fri, 29 Oct 1993 15:51:37 CST
Subject: Mac MOLECULAR EDITOR
Program_Name: Molecular Editor
Operating_System: Mac
Computer_Type: Macintosh
Contact_Affiliation: Intellimation
From ??? (at) ??? Mon Nov 08 08:27:10 1993
Date: Mon, 8 Nov 93 10:22:39 +0100
From: flukiger (at) cscs.ch (Peter Fluekiger)
Subject: SGI MOLEKEL
Program_Name: MOLEKEL
Program_Version: 2.1
Program_Date: Summer '93
Topic: organic, inorganic, organometallic, proteins
Topic: visualization of computational results (orbitals, density, mep, dynamics)
Bibliographic_Ref: CrossCuts 2 (1993), p. 4 (Newsletter of the Swiss Scientific
Bibliographic_Ref: Computing Center)
Input_Format: PDB, Gaussian-, DeMon-, ExtHuc-, Charmm-, and other output files
Output_Format: PDB and surface description files
Molecular_Model: wire, stick, stick_and_ball, CPK, surfaces
Output_Type: display, SGI-rasterfile
Operating_System: Unix
Computer_Type: SGI-workstation (from Indy to RE2)
Graphic_Library: GL
Distribution_Method: commercial, soon a free version with reduced functionality
Ftp_Site (for reduced version and images): pobox.cscs.ch (148.187.10.13)
Ftp_Directory: /pub/CSCS/graphics/molekel
Price_Academic: sFr. 500.- ($ 350.-)
Price_Private: sFr. 5000.- ($ 3500.-)
Contact_Affiliation: Swiss Scientific Computing Center
Contact_Name: Dr. Peter F. Fluekiger
Contact_Phone: +41-91-50 82 05
Contact_Fax: +41-91-50 67 11
Contact_Email: flukiger (at) cscs.ch
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: MOLSCRIPT
Program_Name:
Program_Version:
Program_Date:
Topic:
Bibliographic_Ref:
Input_Format: PDB
Output_Format: Postscript
Molecular_Model:
Output_Type:
Operating_System:
Computer_Type:
Hardware_Requested:
Hardware_Supported:
Graphic_Library:
Distribution_Method:
Ftp_Site:
Ftp_Directory:
Price_Academic:
Price_Private:
Contact_Affiliation: University of Cambridge, UK
Contact_Name: Dr. Per Kraulis
Contact_Phone: +44 223 333 596
Contact_Fax: +44 223 333 345
Contact_Email: pjk19 (at) mbug.bio.cam.ac.uk
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Date: Thu, 11 Nov 93 09:35:45 -0600
From: steve (at) ion.rice.edu (Steve Ludtke)
Subject: NeXTStep MOLVIEWER
Program_Name: MolViewer
Program_Version: 0.91
Program_Date: Aug 26, 1993
Topic: simple_molecule, protein, inorganic
Input_Format: PDB, Alchemy, MolViewer
Output_Format: Alchemy, Hyperchem, MolViewer
Molecular_Model: wire, stick, stick_and_ball, CPK
Output_Type: display (interactive rotation/modification), PostScript, TIFF
Operating_System: NeXTStep
Computer_Type: NeXT or NeXTStep on a PC
Graphic_Library: Renderman (built into NeXTStep)
Distribution_Method: freeware
Ftp_Site: ion.rice.edu
Ftp_Directory: /pub
Price_Academic: n/a
Price_Private: n/a
Contact_Affiliation: Physics Dept., Rice University
Contact_Name: Steve Ludtke
Contact_Phone: (713)527-4809
Contact_Fax:
Contact_Email: steve (at) ion.rice.edu, stevel (at) alumni.caltech.edu
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: MULTI
Program_Name: MULTI
Program_Version: 3.1 ???
Program_Date:
Topic:
Bibliographic_Ref:
Input_Format:
Output_Format:
Molecular_Model:
Output_Type:
Operating_System:
Computer_Type:
Hardware_Requested:
Hardware_Supported:
Graphic_Library:
Distribution_Method:
Ftp_Site:
Ftp_Directory:
Price_Academic:
Price_Private:
Contact_Affiliation: NIH ???
Contact_Name:
Contact_Phone:
Contact_Fax:
Contact_Email:
From ??? (at) ??? Fri Oct 29 17:41:27 1993
Date: Fri, 29 Oct 1993 15:51:37 CST
Subject: Mac NANOVISION
Program_Name: NanoVision
Operating_System: Mac
Computer_Type: Macintosh
Contact_Affiliation: American Chemical Society
Contact_Phone: +1-202-872-4363 (1-800-227-5558)
Contact_Fax:+1-202-872-6067
From ??? (at) ??? Fri Oct 29 17:41:27 1993
Date: Fri, 29 Oct 1993 15:51:37 CST
Subject: Mac ORTEP
Program_Name: ORTEP
Operating_System: Mac
Computer_Type: Macintosh
Contact_Affiliation: University of Electro-Communications in Tokyo)
Price_Academic: Free
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: PC PCMAGE
Program_Name: PCMAGE
Program_Version:
Program_Date:
Topic:
Bibliographic_Ref:
Input_Format:
Output_Format:
Molecular_Model:
Output_Type:
Operating_System:
Computer_Type:
Hardware_Requested:
Hardware_Supported:
Graphic_Library:
Distribution_Method:
Ftp_Site:
Ftp_Directory:
Price_Academic:
Price_Private:
Contact_Affiliation:
Contact_Name:
Contact_Phone:
Contact_Fax:
Contact_Email:
From ??? (at) ??? Fri Oct 29 17:41:27 1993
Date: Fri, 29 Oct 1993 15:51:37 CST
Subject: Mac PCMODEL
Program_Name: PCMODEL
Operating_System: Mac
Computer_Type: Macintosh
Contact_Affiliation: Serena Software
From ??? (at) ??? Mon Nov 08 10:31:44 1993
Date: Mon, 8 Nov 93 07:10:46 -0500
From: system (at) cuhhca.hhmi.columbia.EDU (Phil Bourne)
Subject: Unix PDBVIEW
Program_Name: PDBview
Program_Version: 1.1
Program_Date: Jul 93
Topic: protein DNA
Bibliographic_Ref: CABIOS Pending
Input_Format: PDB,
Output_Format: None
Molecular_Model: stick, alpha_trace, ...
Output_Type: display, PostScript
Operating_System: Unix
Computer_Type: All Unix workstations with X/Motif
Hardware_Requested: None
Hardware_Supported: None
Graphic_Library: X11 Motif
Distribution_Method: public_domain
Ftp_Site: cuhhca.hhmi.columbia.edu
Ftp_Directory: pub/programs/PDB/PDBview
Price_Academic: 0
Price_Private: 0
Contact_Affiliation: Columbia University
Contact_Name: Philip E. Bourne
Contact_Phone: +1-212-305-3657
Contact_Fax: 1-212-305-7379
Contact_Email: system (at) cuhhca.hhmi.columbia.edu
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: Mac PROTEIN EXPERT
Program_Name:
Program_Version: 1.0
Program_Date:
Topic:
Bibliographic_Ref:
Input_Format:
Output_Format:
Molecular_Model:
Output_Type:
Operating_System:
Computer_Type:
Hardware_Requested:
Hardware_Supported:
Graphic_Library:
Distribution_Method:
Ftp_Site:
Ftp_Directory:
Price_Academic:
Price_Private:
Contact_Affiliation: Halpern Software Inc
Contact_Name:
Contact_Phone: +1-408-9252-2038
Contact_Fax:
Contact_Email:
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Date: Sat, 13 Nov 93 12:34:05 -0800
From: swanson (at) proteus.bioeng.washington.edu (Eric Swanson)
Subject: SGI PSSHOW
Program_Name: PSSHOW
Program_Version: 1.5
Program_Date: July 1993
Topic: General molecular graphics
Bibliographic_Ref: N/A
Input_Format: PDB, CSD, Amber, MAACS, MOPAC, DGEOM, Gaussian, MOL2, Zmat, ...
Output_Format: PDB, Amber, MAACS, MOPAC, DGEOM, Gaussian, MOL2, ...
Molecular_Model: wire, stick, stick_and_ball, CPK, ribbon, alpha_trace
Output_Type: display, PostScript
Operating_System: Unix (IRIX 3.x, 4.x)
Computer_Type: SGI IRIS, Indigo
Hardware_Requested:
Hardware_Supported: stereo (Stereographics or Crystal Eyes)
Graphic_Library: SGI GL
Distribution_Method: commercial
Ftp_Site: N/A
Ftp_Directory: N/A
Price_Academic: inquire
Price_Private: inquire
Contact_Affiliation: independent
Contact_Name: Eric Swanson
Contact_Phone: 206-783-7253
Contact_Fax:
Contact_Email: swanson (at) proteus.bioeng.washington.edu
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Date: 20 Nov 1993 17:02:58 +0000
From: "Don Gregory"
Subject: Unix QUANTA
Program_Name: Quanta
Program_Version: 4.0
Program_Date:
Topic: simple_molecule, drug, crystal, polymer, protein, inorganic, ...
Topic: Small molecule, drug design, protein, polysaccharide,"
Topic: nucleic acid, crystallography, NMR structure determination
Input_Format / Output_Format: PDB, XPLOR, FDAT, CCDB, MDL,
Molecular_Model: Wire, stick, ball & stick, CPK, ribbon, alpha-carbon
Molecular_Model: mixed (all of the above in a single picture), Ray Trace
Output_Type: display Postscript, HPGL
Operating_System: Unix
Computer_Type: IBM RS/6000, SGI Indigo, All SGI's; DEC; HP7xx; IBM RS/6000
Hardware_Requested: dials, coprocessor, ... (none)
Hardware_Supported: Dials&Buttons, Spaceball
Hardware_Supported: Stereo (side_by_side, internal, StereoGraphics)
Graphic_Library: GL
Distribution_Method: commercial, academic
Price_Academic:
Price_Private:
Contact_Affiliation: Molecular Simulations Inc.
Contact_Name: Cathy Terwedow; Marketing Manager
Contact_Phone: (617) 229-9800
Contact_Fax: (617) 229-9899
Contact_Email: support (at) msi.com
From ??? (at) ??? Mon Nov 08 09:07:33 1993
Date: Mon, 8 Nov 93 15:34:10 GMT
From: Roger Sayle
Subject: Unix RASMOL
Program_Name: RasMol
Program_Version: 2.3
Program_Date: 14/10/93
Topic: protein, nucleic acid, drug, simple_molecule, inorganic.
Input_Format: PDB, Alchemy
Output_Format: PDB, Alchemy
Molecular_Model: wire, stick, stick_and_ball, CPK, ribbon, alpha_trace,
Molecular_Model: hydrogen bonding and disulphide bridges (stick & wire)
Output_Type: display, PostScript, GIF, Sun Rasterfile, PPM, BMP
Operating_System: Unix [SunOs, Solaris, IRIX, AIX, HP-UX, RiscOs, OSF/1,
Operating_System: Dynix, 386BSD, Linux]
Computer_Type: SUN, SGI Mips, DEC Mips, ESV Mips, IBM RS/6000, DEC Alpha, PC,
Computer_Type: Sequent
Hardware_Supported: dials
Graphic_Library: X11
Distribution_Method: public_domain
Ftp_Site: ftp.dcs.ed.ac.uk [129.215.160.5]
Ftp_Directory: /pub/rasmol
Price_Academic: FREE ($40 or 25GBP)
Price_Private: FREE ($40 or 25GBP)
Contact_Affiliation: University of Edinburgh
Contact_Name: Roger Sayle
Contact_Phone: +44-31-650-5163
Contact_Fax: +44-31-667-7209
Contact_Email: rasmol (at) dcs.ed.ac.uk
From ??? (at) ??? Mon Nov 08 09:07:35 1993
Date: Mon, 8 Nov 93 15:50:44 GMT
From: Roger Sayle
Subject: PC RASWIN
Program_Name: RasWin
Program_Version: 2.3
Program_Date: 14/10/93
Topic: protein, nucleic acid, drug, simple_molecule, inorganic.
Input_Format: PDB, Alchemy
Output_Format: PDB, Alchemy
Molecular_Model: wire, stick, stick_and_ball, CPK, ribbon, alpha_trace,
Molecular_Model: hydrogen bonding and disulphide bridges (stick & wire)
Output_Type: display, PostScript, GIF, Sun Rasterfile, PPM, BMP
Operating_System: Microsoft Windows 3.1
Computer_Type: IBM PC
Graphic_Library: Microsoft Software Development Kit (SDK)
Distribution_Method: public_domain
Ftp_Site: ftp.dcs.ed.ac.uk [129.215.160.5]
Ftp_Directory: /pub/rasmol
Price_Academic: FREE ($40 or 25GBP)
Price_Private: FREE ($40 or 25GBP)
Contact_Affiliation: University of Edinburgh
Contact_Name: Roger Sayle
Contact_Phone: +44-31-650-5163
Contact_Fax: +44-31-667-7209
Contact_Email: rasmol (at) dcs.ed.ac.uk
From ??? (at) ??? Mon Nov 08 08:29:13 1993
Date: Mon, 8 Nov 93 08:06:54 -0600
From: carson (at) luna.cmc.uab.edu (mike carson)
Subject: Unix RIBBONS
Program_Name: Ribbons
Program_Version: 2.2
Program_Date: Sept93
Topic: molecular display of simple_molecules, proteins, nucleic acids.
Bibliographic_Ref: J.Appl.Cryst.(1991) 24:958-961.
Input_Format: PDB
Output_Format: RGB images
Molecular_Model: stick, ball_and_stick, CPK, ribbons
Output_Type: SGI *.rgb format (can convert to many others).
Operating_System: Unix
Computer_Type: SGI, ESV
Hardware_Requested: at least 8-bit color
Hardware_Supported: stereo_display, ...
Graphic_Library: GL, PEX
Distribution_Method: commercial through university
Ftp_Site: iris.cmc.uab.edu
Ftp_Directory: guest/ribbons
Price_Academic: $200
Price_Private: $1200
Contact_Affiliation: UAB Center for Macrolmolecular Crystallography
Contact_Name: Mike Carson
Contact_Phone: 205-934-1983
Contact_Fax: 205-934-0480
Contact_Email: carson (at) luna.cmc.uab.edu
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Date: Tue, 1 Mar 1994 08:35:44 +0200
From: Leif.Laaksonen (at) csc.fi
Subject: SGI SCARECROW
Program_Name: SCARECROW
Program_Version: 1.6
Program_Date: December 1993
Topic: Analysis of Molecular Dynamics trajectories and molecular display
Bibliographic_Ref: J. Molecular Graphics 10 (1992) 33
Input_Format: Coord - PDB, CHARMM, DISCOVER, AMBER, YASP, MUMOD, GROMOS,
Input_Format: HyperChem, MOPAC, GAMESS-output, free format
Input_Format: MD trajectory - CHARMM, DISCOVER, AMBER, YASP, MUMOD, GROMOS,
Input_Format: HyperChem
Output_Format: Coord - Free, CHARMM, Ball&Stick, PDB
Output_Format: Data - Ascii
Output_Format: Graphics - PostScript
Molecular_Model: Stick, ball & stick, CPK, surfaces, mono/stereo
Output_Type: Display, PostScript
Operating_System: Unix, IRIX
Computer_Type: SGI
Hardware_Requested: 24 bit planes, Z-buffer
Hardware_Supported: Stereo display
Graphic_Library: GL
Distribution_Method: Contact me
Ftp_Site:
Ftp_Directory:
Price_Academic: Free
Price_Private: Contact me
Contact_Affiliation: Center for Scientific Computing
Contact_Name: Leif Laaksonen
Contact_Phone: +358-0-4572378
Contact_Fax: +358-0-4572302
Contact_Email: Leif.Laaksonen (at) csc.fi
From ??? (at) ??? Sat Oct 30 14:00:00 1993
From: kell (at) sun1.ruf.uni-freiburg.de (Egbert Keller)
Subject: PC Unix SCHAKAL92
Date: Wed, 10 Nov 1993 09:49:31 +0100 (MET)
Program_Name: SCHAKAL ("jackal")
Program_Version: SCHAKAL 92
Program_Date: March 1992
Topic: molecules, crystal sections + surfaces
Topic: "realistic" shading incl. highlights + shadows
Topic: (depth dependent) lightness + pseudo-transparency
Topic: automatic labelling of atoms, broken bonds
Bibliographic_Ref: E. Keller, J. Appl. Crystallogr. 22, 19 (1989)
Input_Format: atom names + coordinates, (symmetry), SHELX
Output_Format: atom names + coordinates
Molecular_Model: wire, ball_and_stick, CPK
Output_Type: 8 bit (256 colours) display, HPGL, HP L.Jet III
Computer_Type: DOS PC, IBM RS/6000, SGI IRIS + Indigo
Computer_Type: DECstation, (VAXstation)
Operating_System: MSDOS, UNIX
Hardware_Requested: PC: 386/387, 486, VGA or extended VGA
Hardware_Supported: HP LaserJet III printer or fully compatible
Graphic_Library: UNIX: GL, X11
Distribution_Method: commercial
Price_Academic: DM 600-750 (PC), DM 1200 (UNIX)
Price_Private: DM 1200-1500 (PC), DM 2400 (UNIX)
Contact_Affiliation: Kristallogr. Inst. der Universitaet
Contact_Affiliation: Hebelstr. 25, D-79104 Freiburg, Germany
Contact_Name: Dr. E. Keller
Contact_Phone: +49-761-203-6438
Contact_Fax: +49-761-203-6434
Contact_Email: KELL (at) sun1.ruf.uni-freiburg.de
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: Unix SCIAN
Program_Name: SciAn
Program_Version:
Program_Date:
Topic:
Bibliographic_Ref:
Input_Format: XYZ, Gaussian
Output_Format:
Molecular_Model:
Output_Type:
Operating_System: Unix
Computer_Type:
Hardware_Requested:
Hardware_Supported:
Graphic_Library:
Distribution_Method:
Ftp_Site:
Ftp_Directory:
Price_Academic:
Price_Private:
Contact_Affiliation: Florida State University
Contact_Name: Eric Pepke
Contact_Phone:
Contact_Fax:
Contact_Email:
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: Unix (SGI, HP, IBM) SPARTAN
Program_Name: Spartan
Program_Version: 3.0
Program_Date: Aug. 93
Topic:
Bibliographic_Ref:
Input_Format:
Output_Format:
Molecular_Model:
Output_Type:
Operating_System:
Computer_Type:
Hardware_Requested:
Hardware_Supported:
Graphic_Library:
Distribution_Method:
Ftp_Site:
Ftp_Directory:
Price_Academic:
Price_Private:
Contact_Affiliation: Wavefunction Inc
Contact_Name:
Contact_Phone: +1-714-955-2120
Contact_Fax:
Contact_Email:
From ??? (at) ??? Sat Oct 30 14:00:00 1993
From: Tom Oldfield
Date: Tue, 22 Feb 94 10:06:23 GMT
Subject: Unix Squid
Program_Name: Squid
Program_Version: 1.194
Program_Date: 1/1/94
Topic: simple_molecule, drug, polymer, protein, inorganic, DNA, XY-plot
Topic: XYZ-plot, Data-processing, Crystallographic Analysis, MD analysis
Topic: Cluster analysis,
Bibliographic_Ref: J.Mol.Graphics 1992 December Vol 10 pp 247-252
Input_Format: PDB, KARPLUS, GROMOS, AMBER, General Ascii files
Output_Format: PDB, KARPLUS, MD-trajectory, General Ascii files
Molecular_Model: wire, stick, stick_and_ball, CPK, ribbon, alpha_trace,
Molecular_Model: colour, stereo, vectors, labels
Output_Type: display, PostScript, HPGL, Xfig, (plot84), user
Operating_System: Unix, Windows, VMS
Computer_Type: IBM RS/6000, SGI Indigo, VAX (Old), Convex, Sun, Aliant,...
Hardware_Requested: Cursor
Hardware_Supported: Double buffering
Graphic_Library: GL, X11, tektronix, vt100, user
Distribution_Method: Academic public_domain, commercial
Ftp_Site: yorvic.york.ac.uk
Ftp_Directory: guestfpt
Price_Academic: Free
Price_Private: See Molecular Simulations Inc.
Contact_Affiliation: (Private) Molecular Simulations Inc.,
Contact_Affiliation: (Private) 16 New England Executive Park
Contact_Affiliation: (Private) Burlington
Contact_Affiliation: (Private) MA 01803-5297
Contact_Affiliation: (Private) Tel 617 229 9800
Contact_Affiliation: (Private) Fax 617 229 9899
Contact_Name: (Academic) Tom Oldfield
Contact_Phone: (Academic) ++904 432599
Contact_Fax:
Contact_Email: (Academic) oldfield (at) yorvic.york.ac.uk
From ??? (at) ??? Fri Oct 08 11:26:53 1993
Date: Tue, 15 Mar 94 11:16:23 EST
From: box (at) scisun.sci.ccny.cuny.edu (Vernon G. Box)
Subject: PC STR3DI.EXE, Ver. 7.00
Program_Name: STR3DI.EXE, Ver. 7.01
Program_Date: Version 7.01 1994 (Version 1.00 - 1987)
Topic: all organic molecular types
Bib._Ref.: Heterocycles, 1992, 34, 1631-59 and cited therein
Special_Features: Automatically detects pi-systems, localized and delocalized.
Special_Features: Molecular Mechanics.
Special_Features: Parametrized for n-n, n-sigma, n-pi interactions.
Input_Format: XYZ, fractional XYZ, MM2, MMX
Output_Format: XYZ, MM2, MMX
Molecular_Model: wire, variable wire, wire and ball, space-filled
Output_Type: display, screen-dump to printer (Epson)
Operating_System: MSDOS
Computer_Type: All MSDOS compatibles
Program_Size: 130K compiled code. About 384K during execution.
Hardware_Needed: No special requirements
Hardware_Needed: Can be run efficiently from floppy diskette
Hardware_Needed: Math coprocessor advantageous for molecular mechanics
Graphics_Library: None
Distribution_Method: from author
Price_Student: $40.00
Price_Academic: $50.00
Price_Private: $200.00
Price_Info: Prices are quoted in $US add $5.00 for overseas shipping
Contact_Name: Vernon G. S. Box
Contact_Email: box (at) scisun.sci.ccny.cuny.edu
Contact_Email: 75506,2113 (Compuserve)
Contact_Phone: 1-212-650-8266, 1-908-561-9081
From ??? (at) ??? Tue Nov 02 14:42:03 1993
Date: Tue, 2 Nov 93 12:30:04 EST
From: gene (at) calv2.cray.com (Eugene Fleischmann)
Subject: CRAY/SGI/X-Window UNICHEM
Program_Name: UniChem
Program_Version: 2.1
Program_Date: 11/1/93
Topic: simple_molecule, polymer, inorganic, ...
Bibliographic_Ref: Cray Publications APG-5500, APG-5505
Input_Format: UniChem, Cambridge, PDB, XYZ, MDL Molfile, Insight car file
Output_Format: UniChem, Cambridge, PDB, XYZ, MDL Molfile, Insight car file
Molecular_Model: wire, stick, ball_and_stick, CPK, van der Waals
Output_Type: display, print as PostScript, PBM, PICT, GIF, TIFF
Operating_System: UNICOS/IRIX/UNIX
Computer_Type: Cray EL, X-MP, Y-MP, C90 / SGI (All Workstations)
Computer_Type: X-Window System Workstations
Hardware_Requested: 32 MB memory, 500 MB disk
Hardware_Supported: no additional necessary
Graphic_Library: GL, DGL, X11, Motif
Distribution_Method: commercial
Ftp_Site: none
Ftp_Directory: none
Price_Academic: platform-dependent
Price_Private: platform-dependent
Contact_Affiliation: Cray Research, Inc.
Contact_Name: Thomas Raeuchle
Contact_Phone: 1-800-284-2729 x 33646
Contact_Fax: 1-612-683-3699
Contact_Email: raeuchle (at) gravity.cray.com
From ??? (at) ??? Fri Oct 29 08:47:49 1993
Date: Fri, 29 Oct 1993 12:53:15 +0100
From: Gert.Vriend (at) EMBL-Heidelberg.DE
Subject: Unix, VMS, POSIX, DOS, LINUX, SUN-OS : WHAT IF
Program_Name: WHAT IF
Program_Version:4.9
Topic: protein modeling, graphics, structure function databases
Bibliographic_Ref:J.Mol.Graph. 8, 1990, 52-56.
Input_Format: PDB, GROMOS
Output_Format: PDB, GROMOS, etc.
Molecular_Model: wire, ribbon, alpha_trace, etc.
Output_Type: display, (colour) postscript.
Operating_System: Unix, VMS, POSIX, DOS, LINUX, SUN-OS
Computer_Type: SGI, IBM-Pc LINUX, IBM-Pc DOS, Evans and Sutherland, SUN, X11.
Hardware_Requested: 16 Mbyte RAM, 25 Mbyte Disk space minimally
Hardware_Supported: see computer type
Graphic_Library: GL, WHAT IF specific GL emulators, E & S language, IBM-Pc graph.
Distribution_Method: commercial, but friendly
Ftp_Site:ftp.swift.EMBL-Heidelberg.DE will be installed 1-1-94
Ftp_Directory:ftp at above address
Price_Academic: $250
Price_Private: $5000
Contact_Affiliation: EMBL
Contact_Name: Gert Vriend
Contact_Phone: 49-6221-387473
Contact_Fax: 49-6221-387517
Contact_Email: Vriend (at) EMBL-Heidelberg.DE
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: XDRAW
Program_Name: XDRAW
Program_Version:
Program_Date:
Topic:
Bibliographic_Ref:
Input_Format:
Output_Format:
Molecular_Model:
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Computer_Type:
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Hardware_Supported:
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Distribution_Method:
Ftp_Site:
Ftp_Directory:
Price_Academic:
Price_Private:
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Contact_Name:
Contact_Phone:
Contact_Fax:
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From ??? (at) ??? Sat Oct 30 14:00:00 1993
Date: Wed, 30 Mar 1994 15:20:40 -0600
From: doherty (at) msc.edu (David C. Doherty)
Subject: Unix XMol
Program_Name: XMol
Program_Version: 1.3.1
Program_Date: 28 May 1993
Topic: simple_molecule, drug, crystal, polymer, protein, inorganic, ...
Bibliographic_Ref:XMol, version 1.3.1, Minnesota Supercomputer Center,
Inc.,Minneapolis MN, 1993.
Input_Format: XYZ, Mopac, Gaussian92, CHEMLAB-II, Molsim, Alchemy, PDB
Output_Format: XYZ, Mopac, Gaussian92, CHEMLAB-II, Molsim, Alchemy, PDB
Molecular_Model: ball_and_stick, stick, CPK, ribbon, alpha_trace
Output_Type: display, PostScript Operating_System: Irix, Ultrix, AIX, SunOS
Computer_Type: IBM RS/6000, SGI Iris/4D, DecStation, Sun3, Sparcstation
Graphic_Library: X11/Motif
Distribution_Method: Free_via_anonymous_ftp
Ftp_Site: ftp.msc.edu
Ftp_Directory: pub/xmol
Price_Academic: Free
Price_Private: Free
Contact_Affiliation: Minnesota Supercomputer Center, Inc.
Contact_Name: David C. Doherty
Contact_Phone: (612)337-3402
Contact_Fax: (612)337-3400
Contact_Email: xmol (at) msc.edu
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: XPDB
Program_Name: Xpdb
Program_Version:
Program_Date:
Topic:
Bibliographic_Ref:
Input_Format:
Output_Format:
Molecular_Model:
Output_Type:
Operating_System:
Computer_Type:
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Distribution_Method:
Ftp_Site:
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Price_Academic:
Price_Private:
Contact_Affiliation: Centre for High Performance Computing, University of Texas
Contact_Name: Mr. Vinod T. Nair
Contact_Phone:
Contact_Fax:
Contact_Email: vtn (at) almach.chpc.utexas.edu
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Date: Tue, 22 Feb 94 16:24:00 PST
From: dem (at) fourier (Duncan McRee)
Subject: Unix XTALVIEW
Program_Name: XtalView
Program_Version: 2.0
Program_Date: January 1994
Program_Author: Duncan E. McRee, The Scripps Research Institute
Topic: simple_molecule, drug, crystal, protein
Bibliographic_Ref: McRee, D.E., J. Mol. Graphics, Vol 10, pp. 44-36, 1992.
Input_Format: PDB
Output_Format: PDB
Molecular_Model: wire
Output_Type: displays: GL, PostScript
Operating_System: Unix
Computer_Type: SUN-sparc OS4+, SGI OS4+, DEC ULTRIX4
Computer_Type: (other sites have ported to IBM RS/6000, LINUX, Stellar)
Hardware_Requested: screen, mouse, keyboard
Hardware_Supported: stereo_display, dials
Graphic_Library: PHIGS(DEC), X11(All), GX/GS(SUN), GLX(SGI)
Distribution_Method: freeware (for non-profit)
Ftp_Site: ftp.sdsc.edu
Ftp_Directory: send email to ccms-request (at) sdsc.edu with single line "get xtalview", no subject.
Price_Academic: free
Price_Private: 500.00
Contact_Name: The Computational Center for Macromolecular Structure (CCMS)
Contact_Phone: +1-234-567-8901 (international number of the headquarters)
Contact_Email: ccms-help (at) sdsc.edu
From ??? (at) ??? Sat Oct 30 14:00:00 1993
Subject: Empty record
Program_Name:
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